SMTL ID : 7t5r.1 (1 other biounit)

P. aeruginosa LpxA in complex with ligand H7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

4 x F30: 3-bromo-N-[3-(1H-tetrazol-5-yl)phenyl]-1H-indole-5-carboxamide(Non-covalent)

F30.1: 11 residues within 4Å: Chain A: V.132, N.133, S.150, F.166, G.168, M.169, F.184 Chain B: H.118, A.136, A.138, H.156 10 PLIP interactions: 4 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:A.138, A:V.132 Water bridges: B:H.118, B:A.138, A:N.133, A:N.133, A:S.150 pi-Stacking: B:H.156, A:F.166 Hydrogen bonds: A:M.169 F30.2: 13 residues within 4Å: Chain B: V.132, N.133, S.150, G.151, F.166, G.168, M.169, F.184 Chain C: D.70, H.118, A.136, A.138, H.156 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain C Hydrophobic interactions: B:V.132, C:A.138 Hydrogen bonds: B:G.151, B:M.169 Water bridges: B:N.133, B:N.133, C:D.70, C:D.70, C:H.118, C:A.138 pi-Stacking: B:F.166, C:H.156 F30.3: 12 residues within 4Å: Chain A: D.70, H.118, A.136, A.138, H.156 Chain C: V.132, N.133, F.166, G.168, M.169, F.184 Ligands: F30.4 11 PLIP interactions: 4 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:V.132, C:F.166, A:A.138 Hydrogen bonds: C:M.169 Water bridges: C:N.133, A:D.70, A:D.70, A:H.118, A:H.118, A:A.138 pi-Stacking: A:H.156 F30.4: 9 residues within 4Å: Chain C: V.132, I.148, S.150, F.166, F.184, R.191, N.194, E.196 Ligands: F30.3 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:I.148, C:F.166 Hydrogen bonds: C:R.191 pi-Stacking: C:F.166 Halogen bonds: C:S.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sacco, M.D. et al., Structure-Based Ligand Design Targeting Pseudomonas aeruginosa LpxA in Lipid A Biosynthesis. Acs Infect Dis. (2022)

Release Date

2022-07-06

Peptides

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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