SMTL ID : 7t5x.1 (1 other biounit)

P. aeruginosa LpxA in complex with ligand L6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x F4L: Nalpha-(tert-butoxycarbonyl)-N-1H-tetrazol-5-yl-D-tryptophanamide(Non-covalent)

F4L.1: 12 residues within 4Å: Chain A: V.132, I.148, S.150, G.151, F.166, G.168, M.169 Chain B: A.136, A.138, L.154, V.155, H.156 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:A.136, B:A.138, B:L.154, A:V.132, A:I.148 Hydrogen bonds: A:S.150, A:S.150, A:S.150, A:G.151, A:M.169 F4L.2: 15 residues within 4Å: Chain B: M.114, I.130, V.132, I.148, S.150, G.151, F.166, G.168, M.169, F.184 Chain C: D.70, A.136, A.138, V.155, H.156 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:I.130, B:V.132, B:V.132, B:I.148, C:A.136, C:A.138 Hydrogen bonds: B:S.150, B:S.150, B:G.151, B:M.169 pi-Stacking: C:H.156 F4L.3: 16 residues within 4Å: Chain A: D.70, A.136, L.137, A.138, L.154, V.155, H.156 Chain C: I.130, V.132, I.148, S.150, G.151, F.166, G.168, M.169, F.184 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:I.130, C:V.132, C:I.148, A:A.138, A:L.154 Hydrogen bonds: C:S.150, C:S.150, C:G.151, C:M.169, A:D.70, A:H.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sacco, M.D. et al., Structure-Based Ligand Design Targeting Pseudomonas aeruginosa LpxA in Lipid A Biosynthesis. Acs Infect Dis. (2022)

Release Date

2022-07-06

Peptides

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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