SMTL ID : 7t61.1 (1 other biounit)

P. aeruginosa LpxA in complex with ligand L15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.246, D.247, Q.250 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.246, A:Q.250 Water bridges: A:D.247, A:D.247 GOL.4: 5 residues within 4Å: Chain B: A.190, Y.215, Y.219, R.220, R.258 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.258 Water bridges: B:R.220, B:R.220

3 x FCU: (3S)-3-({[(Z)-phenylmethylidene]carbamoyl}amino)-N-(1H-tetrazol-5-yl)-1-[3-(trifluoromethyl)benzoyl]-2,3-dihydro-1H-indole-3-carboxamide(Non-covalent)

FCU.2: 18 residues within 4Å: Chain A: M.114, V.132, N.133, S.150, G.151, F.166, M.169 Chain B: T.68, D.70, H.118, H.121, A.136, L.137, A.138, H.156, Q.157, Y.158, R.254 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:V.132, A:F.166, B:D.70, B:A.138 Hydrogen bonds: A:G.151, B:Q.157, B:Q.157, B:R.254 pi-Stacking: B:H.156 FCU.5: 16 residues within 4Å: Chain A: D.70, H.118, A.136, L.137, A.138, H.156, Q.157, Y.158 Chain C: M.114, I.130, V.132, N.133, S.150, G.151, F.166, M.169 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:I.130, C:V.132, C:F.166, A:A.138 Hydrogen bonds: C:G.151, A:Q.157 Water bridges: A:Q.157 pi-Stacking: A:H.156 FCU.6: 17 residues within 4Å: Chain B: M.114, V.132, N.133, S.150, G.151, F.166, M.169 Chain C: T.68, D.70, H.118, H.121, A.136, L.137, A.138, H.156, Q.157, Y.158 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:V.132, B:F.166, C:D.70, C:A.138 Hydrogen bonds: B:G.151, C:Q.157, C:Q.157 pi-Stacking: C:H.156

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain B: S.192, Y.215, R.220 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.215 Salt bridges: B:R.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sacco, M.D. et al., Structure-Based Ligand Design Targeting Pseudomonas aeruginosa LpxA in Lipid A Biosynthesis. Acs Infect Dis. (2022)

Release Date

2022-07-06

Peptides

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

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