- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 12 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
P3S.2: 23 residues within 4Å:- Chain A: E.130, E.132, Y.154, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Chain I: D.52, S.55
- Ligands: ADP.1, MG.3, MG.4, MG.5
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:E.302
- Hydrogen bonds: A:E.132, A:Q.192, A:N.238, A:G.239, A:G.241, A:H.243, A:R.314, A:R.333, A:R.333
- Water bridges: A:E.194, A:G.239
- Salt bridges: A:H.243, A:R.296
P3S.7: 20 residues within 4Å:- Chain A: D.52
- Chain B: E.130, E.132, E.187, E.194, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, R.319, E.331, R.333
- Ligands: ADP.6, MG.8, MG.9, MG.10
17 PLIP interactions:1 interactions with chain A, 16 interactions with chain B- Hydrogen bonds: A:D.52, B:E.132, B:E.132, B:N.238, B:G.239, B:G.241, B:H.243, B:R.314, B:R.319, B:R.333, B:R.333
- Hydrophobic interactions: B:E.302
- Water bridges: B:Q.192, B:E.194, B:G.239
- Salt bridges: B:H.243, B:R.296
P3S.12: 22 residues within 4Å:- Chain B: D.52, S.55
- Chain C: E.130, E.132, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Ligands: ADP.11, MG.13, MG.14, MG.15
13 PLIP interactions:11 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:E.132, C:Q.192, C:N.238, C:G.239, C:G.241, C:R.314, C:R.333, C:R.333, B:D.52
- Water bridges: C:G.239, B:D.52
- Salt bridges: C:H.243, C:R.296
P3S.17: 23 residues within 4Å:- Chain D: E.130, E.132, Y.154, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Chain L: D.52, S.55
- Ligands: ADP.16, MG.18, MG.19, MG.20
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:E.302
- Hydrogen bonds: D:E.132, D:Q.192, D:N.238, D:G.239, D:G.241, D:H.243, D:R.314, D:R.333, D:R.333
- Water bridges: D:E.194, D:G.239
- Salt bridges: D:H.243, D:R.296
P3S.22: 20 residues within 4Å:- Chain D: D.52
- Chain E: E.130, E.132, E.187, E.194, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, R.319, E.331, R.333
- Ligands: ADP.21, MG.23, MG.24, MG.25
17 PLIP interactions:16 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:E.302
- Hydrogen bonds: E:E.132, E:E.132, E:N.238, E:G.239, E:G.241, E:H.243, E:R.314, E:R.319, E:R.333, E:R.333, D:D.52
- Water bridges: E:Q.192, E:E.194, E:G.239
- Salt bridges: E:H.243, E:R.296
P3S.27: 22 residues within 4Å:- Chain E: D.52, S.55
- Chain F: E.130, E.132, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Ligands: ADP.26, MG.28, MG.29, MG.30
13 PLIP interactions:11 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:E.132, F:Q.192, F:N.238, F:G.239, F:G.241, F:R.314, F:R.333, F:R.333, E:D.52
- Water bridges: F:G.239, E:D.52
- Salt bridges: F:H.243, F:R.296
P3S.32: 23 residues within 4Å:- Chain C: D.52, S.55
- Chain G: E.130, E.132, Y.154, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Ligands: ADP.31, MG.33, MG.34, MG.35
15 PLIP interactions:14 interactions with chain G, 1 interactions with chain C- Hydrophobic interactions: G:E.302
- Hydrogen bonds: G:E.132, G:E.187, G:Q.192, G:N.238, G:G.239, G:G.241, G:R.314, G:R.333, G:R.333, C:D.52
- Water bridges: G:E.194, G:G.239
- Salt bridges: G:H.243, G:R.296
P3S.37: 20 residues within 4Å:- Chain G: D.52
- Chain H: E.130, E.132, E.187, E.194, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, R.319, E.331, R.333
- Ligands: ADP.36, MG.38, MG.39, MG.40
14 PLIP interactions:14 interactions with chain H- Hydrophobic interactions: H:E.302
- Hydrogen bonds: H:E.132, H:N.238, H:G.239, H:G.241, H:R.314, H:R.319, H:R.333, H:R.333
- Water bridges: H:Q.192, H:E.194, H:G.239
- Salt bridges: H:H.243, H:R.296
P3S.42: 22 residues within 4Å:- Chain H: D.52, S.55
- Chain I: E.130, E.132, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Ligands: ADP.41, MG.43, MG.44, MG.45
13 PLIP interactions:12 interactions with chain I, 1 interactions with chain H- Hydrogen bonds: I:E.132, I:Q.192, I:N.238, I:G.239, I:G.241, I:H.243, I:R.314, I:R.333, I:R.333
- Water bridges: I:G.239, H:D.52
- Salt bridges: I:H.243, I:R.296
P3S.47: 23 residues within 4Å:- Chain F: D.52, S.55
- Chain J: E.130, E.132, Y.154, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Ligands: ADP.46, MG.48, MG.49, MG.50
15 PLIP interactions:14 interactions with chain J, 1 interactions with chain F- Hydrophobic interactions: J:E.302
- Hydrogen bonds: J:E.132, J:E.187, J:Q.192, J:N.238, J:G.239, J:G.241, J:R.314, J:R.333, J:R.333, F:D.52
- Water bridges: J:E.194, J:G.239
- Salt bridges: J:H.243, J:R.296
P3S.52: 20 residues within 4Å:- Chain J: D.52
- Chain K: E.130, E.132, E.187, E.194, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, R.319, E.331, R.333
- Ligands: ADP.51, MG.53, MG.54, MG.55
14 PLIP interactions:14 interactions with chain K- Hydrophobic interactions: K:E.302
- Hydrogen bonds: K:E.132, K:N.238, K:G.239, K:G.241, K:R.314, K:R.319, K:R.333, K:R.333
- Water bridges: K:Q.192, K:E.194, K:G.239
- Salt bridges: K:H.243, K:R.296
P3S.57: 22 residues within 4Å:- Chain K: D.52, S.55
- Chain L: E.130, E.132, E.187, V.188, E.194, N.238, G.239, G.241, H.243, R.296, Y.301, E.302, A.303, R.314, E.331, R.333
- Ligands: ADP.56, MG.58, MG.59, MG.60
13 PLIP interactions:12 interactions with chain L, 1 interactions with chain K- Hydrogen bonds: L:E.132, L:Q.192, L:N.238, L:G.239, L:G.241, L:H.243, L:R.314, L:R.333, L:R.333
- Water bridges: L:G.239, K:D.52
- Salt bridges: L:H.243, L:R.296
- 36 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 6 residues within 4Å:- Chain A: E.130, E.132, E.187, E.194
- Ligands: P3S.2, MG.5
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.132, A:E.187, A:E.194, H2O.2
MG.4: 8 residues within 4Å:- Chain A: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.1, P3S.2, MG.5
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.130, A:E.130, A:H.243, A:E.331
MG.5: 7 residues within 4Å:- Chain A: E.130, E.194, D.196
- Ligands: ADP.1, P3S.2, MG.3, MG.4
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.130, A:E.194, H2O.5
MG.8: 7 residues within 4Å:- Chain B: E.130, E.194, D.196
- Ligands: ADP.6, P3S.7, MG.9, MG.10
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.130, B:E.194, H2O.15
MG.9: 8 residues within 4Å:- Chain B: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.6, P3S.7, MG.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.130, B:E.130, B:H.243, B:E.331
MG.10: 5 residues within 4Å:- Chain B: E.132, E.187, E.194
- Ligands: P3S.7, MG.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.132, B:E.187, B:E.194
MG.13: 8 residues within 4Å:- Chain C: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.11, P3S.12, MG.14
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.130, C:E.130, C:H.243, C:E.331
MG.14: 7 residues within 4Å:- Chain C: E.130, E.194, D.196
- Ligands: ADP.11, P3S.12, MG.13, MG.15
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.130, C:E.194, H2O.25
MG.15: 5 residues within 4Å:- Chain C: E.132, E.187, E.194
- Ligands: P3S.12, MG.14
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.132, C:E.187, C:E.194, H2O.27
MG.18: 6 residues within 4Å:- Chain D: E.130, E.132, E.187, E.194
- Ligands: P3S.17, MG.20
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.132, D:E.187, D:E.194, H2O.32
MG.19: 8 residues within 4Å:- Chain D: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.16, P3S.17, MG.20
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.130, D:E.130, D:H.243, D:E.331
MG.20: 7 residues within 4Å:- Chain D: E.130, E.194, D.196
- Ligands: ADP.16, P3S.17, MG.18, MG.19
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.130, D:E.194, H2O.35
MG.23: 7 residues within 4Å:- Chain E: E.130, E.194, D.196
- Ligands: ADP.21, P3S.22, MG.24, MG.25
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:E.130, E:E.194, H2O.46
MG.24: 8 residues within 4Å:- Chain E: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.21, P3S.22, MG.23
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:E.130, E:E.130, E:H.243, E:E.331
MG.25: 5 residues within 4Å:- Chain E: E.132, E.187, E.194
- Ligands: P3S.22, MG.23
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:E.132, E:E.187, E:E.194
MG.28: 8 residues within 4Å:- Chain F: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.26, P3S.27, MG.29
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:E.130, F:E.130, F:H.243, F:E.331
MG.29: 7 residues within 4Å:- Chain F: E.130, E.194, D.196
- Ligands: ADP.26, P3S.27, MG.28, MG.30
3 PLIP interactions:2 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.130, F:E.194, H2O.56
MG.30: 5 residues within 4Å:- Chain F: E.132, E.187, E.194
- Ligands: P3S.27, MG.29
4 PLIP interactions:3 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.132, F:E.187, F:E.194, H2O.58
MG.33: 6 residues within 4Å:- Chain G: E.130, E.132, E.187, E.194
- Ligands: P3S.32, MG.35
4 PLIP interactions:3 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:E.132, G:E.187, G:E.194, H2O.63
MG.34: 8 residues within 4Å:- Chain G: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.31, P3S.32, MG.35
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:E.130, G:E.130, G:H.243, G:E.331
MG.35: 7 residues within 4Å:- Chain G: E.130, E.194, D.196
- Ligands: ADP.31, P3S.32, MG.33, MG.34
3 PLIP interactions:2 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:E.130, G:E.194, H2O.66
MG.38: 7 residues within 4Å:- Chain H: E.130, E.194, D.196
- Ligands: ADP.36, P3S.37, MG.39, MG.40
3 PLIP interactions:2 interactions with chain H, 1 Ligand-Water interactions- Metal complexes: H:E.130, H:E.194, H2O.76
MG.39: 8 residues within 4Å:- Chain H: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.36, P3S.37, MG.38
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:E.130, H:E.130, H:H.243, H:E.331
MG.40: 5 residues within 4Å:- Chain H: E.132, E.187, E.194
- Ligands: P3S.37, MG.38
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:E.132, H:E.187, H:E.194
MG.43: 8 residues within 4Å:- Chain I: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.41, P3S.42, MG.44
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:E.130, I:E.130, I:H.243, I:E.331
MG.44: 7 residues within 4Å:- Chain I: E.130, E.194, D.196
- Ligands: ADP.41, P3S.42, MG.43, MG.45
3 PLIP interactions:2 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:E.130, I:E.194, H2O.87
MG.45: 5 residues within 4Å:- Chain I: E.132, E.187, E.194
- Ligands: P3S.42, MG.44
4 PLIP interactions:3 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:E.132, I:E.187, I:E.194, H2O.89
MG.48: 6 residues within 4Å:- Chain J: E.130, E.132, E.187, E.194
- Ligands: P3S.47, MG.50
4 PLIP interactions:3 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:E.132, J:E.187, J:E.194, H2O.94
MG.49: 8 residues within 4Å:- Chain J: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.46, P3S.47, MG.50
4 PLIP interactions:4 interactions with chain J- Metal complexes: J:E.130, J:E.130, J:H.243, J:E.331
MG.50: 7 residues within 4Å:- Chain J: E.130, E.194, D.196
- Ligands: ADP.46, P3S.47, MG.48, MG.49
3 PLIP interactions:2 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:E.130, J:E.194, H2O.97
MG.53: 7 residues within 4Å:- Chain K: E.130, E.194, D.196
- Ligands: ADP.51, P3S.52, MG.54, MG.55
3 PLIP interactions:2 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:E.130, K:E.194, H2O.107
MG.54: 8 residues within 4Å:- Chain K: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.51, P3S.52, MG.53
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:E.130, K:E.130, K:H.243, K:E.331
MG.55: 5 residues within 4Å:- Chain K: E.132, E.187, E.194
- Ligands: P3S.52, MG.53
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:E.132, K:E.187, K:E.194
MG.58: 8 residues within 4Å:- Chain L: E.130, H.243, R.319, E.331, R.333
- Ligands: ADP.56, P3S.57, MG.59
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:E.130, L:E.130, L:H.243, L:E.331
MG.59: 7 residues within 4Å:- Chain L: E.130, E.194, D.196
- Ligands: ADP.56, P3S.57, MG.58, MG.60
3 PLIP interactions:2 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:E.130, L:E.194, H2O.117
MG.60: 5 residues within 4Å:- Chain L: E.132, E.187, E.194
- Ligands: P3S.57, MG.59
4 PLIP interactions:3 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: L:E.132, L:E.187, L:E.194, H2O.119
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Travis, B.A. et al., Molecular dissection of the glutamine synthetase-GlnR nitrogen regulatory circuitry in Gram-positive bacteria. Nat Commun (2022)
- Release Date
- 2022-06-29
- Peptides
- Glutamine synthetase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
BD
AE
CF
BG
AH
CI
BJ
AK
CL
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 12 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
- 36 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Travis, B.A. et al., Molecular dissection of the glutamine synthetase-GlnR nitrogen regulatory circuitry in Gram-positive bacteria. Nat Commun (2022)
- Release Date
- 2022-06-29
- Peptides
- Glutamine synthetase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
BD
AE
CF
BG
AH
CI
BJ
AK
CL
B