SMTL ID : 7vx6.1

OXA-58 crystal structure of acylated meropenem complex 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.264 Ligands: DWZ.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.264, A:K.264 Salt bridges: A:K.264

1 x MER: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid(Covalent)

MER.2: 15 residues within 4Å: Chain A: A.82, S.83, K.86, F.114, A.116, W.117, S.130, V.132, L.170, S.221, G.222, W.223, I.260, R.263 Ligands: DWZ.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.114, A:V.132, A:L.170, A:W.223, A:I.260 Hydrogen bonds: A:S.83, A:S.221, A:S.221, A:W.223 Water bridges: A:R.263 Salt bridges: A:R.263

1 x DWZ: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Covalent)

DWZ.3: 17 residues within 4Å: Chain A: A.82, S.83, K.86, F.114, W.117, Q.128, A.129, S.130, V.132, L.170, S.221, G.222, W.223, I.260, R.263 Ligands: SO4.1, MER.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.114, A:V.132, A:L.170, A:I.260 Hydrogen bonds: A:S.83, A:A.129, A:S.130, A:S.221, A:W.223 Water bridges: A:R.263 Salt bridges: A:R.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saino, H. et al., OXA-58 crystal structure of acylated meropenem complex 2. To be published

Release Date

2022-11-23

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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