SMTL ID : 7vy3.1

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES LACKING PROTEIN-U

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-11-10-1-mer

Ligands

25 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 30 residues within 4Å: Chain A: F.97, A.124, A.127, Y.128, L.131, W.156, V.157, T.160, G.161, Y.162, N.166, F.167, H.168, H.173, A.176, I.177, F.180, F.181, S.244, A.245, C.247, M.248 Chain B: T.186, Y.210 Ligands: BPH.2, BCL.9, BCL.10, BCL.11, U10.19, PTY.43 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:F.97, A:F.97, A:A.127, A:Y.128, A:W.156, A:T.160, A:Y.162, A:F.167, A:A.176, A:I.177, A:F.180, A:F.181, B:Y.210 Metal complexes: A:H.173 BCL.9: 20 residues within 4Å: Chain A: H.168, M.174, I.177, T.178, F.181, T.182, L.185 Chain B: M.122, W.157, L.160, V.175, I.179, H.182, L.183, T.186 Ligands: BCL.1, U10.4, BCL.11, BPH.12, SPO.14 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A, Hydrophobic interactions: B:L.160, B:V.175, B:L.183, A:I.177, A:I.177 Metal complexes: B:H.182 Hydrogen bonds: A:T.182 BCL.10: 23 residues within 4Å: Chain A: I.46, I.49, Y.128, L.131, F.146, I.150, W.151, H.153, L.154, V.157 Chain B: F.197, G.203, I.206, A.207, Y.210, G.211, L.214 Ligands: BCL.1, BPH.2, BCL.11, U10.19, PGV.20, PTY.25 14 PLIP interactions: 7 interactions with chain A, 7 interactions with chain B, Hydrophobic interactions: A:I.49, A:Y.128, A:L.131, A:F.146, A:L.154, A:V.157, B:F.197, B:I.206, B:I.206, B:A.207, B:Y.210, B:L.214 Metal complexes: A:H.153 pi-Stacking: B:Y.210 BCL.11: 28 residues within 4Å: Chain A: V.157, Y.162, H.168, F.181 Chain B: V.126, A.153, L.156, W.157, L.160, W.185, T.186, N.187, F.189, S.190, L.196, F.197, H.202, S.205, I.206, L.209, Y.210, V.276, G.280, I.284 Ligands: BCL.1, BCL.9, BCL.10, BPH.12 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:V.126, B:V.126, B:A.153, B:L.156, B:W.157, B:W.157, B:W.185, B:T.186, B:F.189, B:I.206, B:L.209, B:Y.210, B:V.276 Metal complexes: B:H.202 BCL.29: 20 residues within 4Å: Chain D: L.24, F.25, A.28, H.32, L.35, W.43 Chain E: G.26, L.29, F.30, V.33, A.34, A.37, H.38, V.41 Chain Y: A.23, M.26, M.27, A.30 Ligands: SPO.30, BCL.32 14 PLIP interactions: 8 interactions with chain D, 2 interactions with chain Y, 4 interactions with chain E, Hydrophobic interactions: D:L.24, D:A.28, D:L.35, D:W.43, D:W.43, D:W.43, D:W.43, Y:M.26, Y:A.30, E:L.29, E:F.30, E:A.37, E:V.41 Metal complexes: D:H.32 BCL.32: 21 residues within 4Å: Chain D: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain E: F.30, S.31, A.34, H.38, V.41, Y.42, W.47, F.48 Chain F: W.43 Ligands: BCL.29, SPO.30, SPO.33, BCL.34, U10.38 11 PLIP interactions: 8 interactions with chain E, 3 interactions with chain D, Hydrophobic interactions: E:A.34, E:Y.42, E:W.47, E:W.47, E:W.47, E:F.48, E:F.48, D:I.31, D:L.35, D:Y.41 Metal complexes: E:H.38 BCL.34: 25 residues within 4Å: Chain A: F.22, F.33, V.36 Chain D: A.19, F.23, I.31 Chain E: F.48 Chain F: L.24, F.25, A.28, H.32, L.35, W.43 Chain G: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: SPO.30, BCL.32, SPO.33, U10.38, BCL.39 20 PLIP interactions: 4 interactions with chain A, 4 interactions with chain D, 1 interactions with chain E, 8 interactions with chain F, 3 interactions with chain G, Hydrophobic interactions: A:F.22, A:F.33, A:F.33, A:V.36, D:F.23, D:F.23, D:I.31, D:I.31, E:F.48, F:L.24, F:F.25, F:L.35, F:W.43, F:W.43, F:W.43, F:W.43, G:A.37, G:V.41, G:W.44 Metal complexes: F:H.32 BCL.39: 21 residues within 4Å: Chain F: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain G: F.30, S.31, A.34, I.35, H.38, V.41, Y.42, W.47, F.48 Chain H: W.43 Ligands: BCL.34, SPO.35, BCL.40, SPO.44 13 PLIP interactions: 9 interactions with chain G, 4 interactions with chain F, Hydrophobic interactions: G:F.30, G:A.34, G:I.35, G:V.41, G:W.47, G:W.47, G:W.47, G:W.47, F:I.31, F:I.31, F:L.35, F:Y.41 Metal complexes: G:H.38 BCL.40: 28 residues within 4Å: Chain F: F.4, I.7, V.16, Q.20, F.23, I.31 Chain G: Y.23, F.48 Chain H: L.24, F.25, A.28, H.32, L.35, W.43 Chain I: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: SPO.35, LMT.36, SPO.37, BCL.39, PGV.42, SPO.44, BCL.46 19 PLIP interactions: 2 interactions with chain G, 6 interactions with chain F, 8 interactions with chain H, 3 interactions with chain I, Hydrophobic interactions: G:Y.23, G:F.48, F:F.4, F:I.7, F:V.16, F:F.23, F:I.31, F:I.31, H:L.24, H:F.25, H:L.35, H:W.43, H:W.43, H:W.43, H:W.43, I:A.37, I:V.41, I:W.44 Metal complexes: H:H.32 BCL.46: 21 residues within 4Å: Chain H: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain I: F.30, S.31, A.34, I.35, H.38, V.41, Y.42, W.47, F.48 Chain J: W.43 Ligands: SPO.37, BCL.40, SPO.48, BCL.50 10 PLIP interactions: 2 interactions with chain H, 8 interactions with chain I, Hydrophobic interactions: H:I.31, H:Y.41, I:F.30, I:A.34, I:V.41, I:W.47, I:W.47, I:W.47, I:W.47 Metal complexes: I:H.38 BCL.50: 28 residues within 4Å: Chain H: F.4, W.8, V.16, Q.20, F.23, I.31 Chain I: H.20, Y.23, F.48 Chain J: G.21, L.24, F.25, A.28, H.32, W.43 Chain K: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: SPO.37, PGV.41, LMT.45, BCL.46, SPO.48, BCL.52 16 PLIP interactions: 6 interactions with chain H, 6 interactions with chain J, 3 interactions with chain K, 1 interactions with chain I, Hydrophobic interactions: H:F.4, H:W.8, H:V.16, H:F.23, H:I.31, H:I.31, J:L.24, J:F.25, J:W.43, J:W.43, J:W.43, K:A.37, K:V.41, K:W.44, I:F.48 Metal complexes: J:H.32 BCL.52: 19 residues within 4Å: Chain J: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain K: F.30, S.31, A.34, H.38, V.41, Y.42, W.47, F.48 Chain L: W.43 Ligands: BCL.50, SPO.53, BCL.55 13 PLIP interactions: 11 interactions with chain K, 2 interactions with chain J, Hydrophobic interactions: K:F.30, K:A.34, K:V.41, K:Y.42, K:W.47, K:W.47, K:W.47, K:W.47, K:F.48, K:F.48, J:I.31, J:Y.41 Metal complexes: K:H.38 BCL.55: 27 residues within 4Å: Chain J: F.4, I.7, V.16, Q.20, F.23, I.31 Chain K: Y.23, F.48 Chain L: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain M: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: SPO.47, LMT.51, BCL.52, SPO.53, BCL.59 22 PLIP interactions: 8 interactions with chain J, 3 interactions with chain M, 9 interactions with chain L, 2 interactions with chain K, Hydrophobic interactions: J:F.4, J:I.7, J:V.16, J:Q.20, J:F.23, J:F.23, J:I.31, J:I.31, M:A.37, M:V.41, M:W.44, L:L.24, L:F.25, L:L.35, L:W.43, L:W.43, L:W.43, L:W.43, K:Y.23, K:F.48 pi-Stacking: L:H.32 Metal complexes: L:H.32 BCL.59: 21 residues within 4Å: Chain L: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain M: F.30, S.31, A.34, I.35, H.38, V.41, Y.42, W.47, F.48 Chain N: W.43 Ligands: BCL.55, SPO.56, BCL.60, SPO.61 17 PLIP interactions: 13 interactions with chain M, 4 interactions with chain L, Hydrophobic interactions: M:F.30, M:A.34, M:I.35, M:V.41, M:Y.42, M:W.47, M:W.47, M:W.47, M:W.47, M:W.47, M:F.48, M:F.48, L:I.31, L:L.35, L:L.35, L:Y.41 Metal complexes: M:H.38 BCL.60: 27 residues within 4Å: Chain L: I.7, V.16, Q.20, F.23, I.31 Chain M: H.20, Y.23, M.24, F.48 Chain N: G.21, L.24, F.25, A.28, H.32, W.43 Chain O: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: SPO.56, PGV.57, BCL.59, SPO.61, BCL.62 17 PLIP interactions: 7 interactions with chain N, 3 interactions with chain O, 1 interactions with chain M, 6 interactions with chain L, Hydrophobic interactions: N:L.24, N:F.25, N:W.43, N:W.43, N:W.43, N:W.43, O:A.37, O:V.41, O:W.44, M:F.48, L:I.7, L:V.16, L:F.23, L:F.23, L:I.31, L:I.31 Metal complexes: N:H.32 BCL.62: 20 residues within 4Å: Chain N: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain O: F.30, S.31, A.34, I.35, H.38, Y.42, W.47, F.48 Chain P: W.43 Ligands: SPO.58, BCL.60, SPO.63, BCL.67 14 PLIP interactions: 12 interactions with chain O, 2 interactions with chain N, Hydrophobic interactions: O:F.30, O:A.34, O:I.35, O:H.38, O:Y.42, O:W.47, O:W.47, O:W.47, O:W.47, O:F.48, O:F.48, N:I.31, N:Y.41 Metal complexes: O:H.38 BCL.67: 24 residues within 4Å: Chain N: V.16, Q.20, F.23, I.31 Chain O: H.20, Y.23, F.48 Chain P: G.21, L.24, F.25, A.28, H.32, W.43 Chain Q: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: SPO.58, BCL.62, SPO.63, BCL.69 17 PLIP interactions: 7 interactions with chain P, 3 interactions with chain Q, 5 interactions with chain N, 2 interactions with chain O, Hydrophobic interactions: P:L.24, P:F.25, P:W.43, P:W.43, P:W.43, P:W.43, Q:A.37, Q:V.41, Q:W.44, N:V.16, N:F.23, N:F.23, N:I.31, N:I.31, O:Y.23, O:F.48 Metal complexes: P:H.32 BCL.69: 20 residues within 4Å: Chain P: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain Q: F.30, S.31, A.34, I.35, H.38, Y.42, W.47, F.48 Chain R: W.43 Ligands: BCL.67, SPO.68, BCL.70, SPO.72 13 PLIP interactions: 10 interactions with chain Q, 3 interactions with chain P, Hydrophobic interactions: Q:F.30, Q:A.34, Q:H.38, Q:W.47, Q:W.47, Q:W.47, Q:W.47, Q:F.48, Q:F.48, P:I.31, P:L.35, P:Y.41 Metal complexes: Q:H.38 BCL.70: 24 residues within 4Å: Chain P: V.16, Q.20, I.31 Chain Q: Y.23, F.48 Chain R: L.24, F.25, A.28, H.32, L.35, W.43 Chain S: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: PGV.66, SPO.68, BCL.69, SPO.71, SPO.72, BCL.73 17 PLIP interactions: 2 interactions with chain Q, 3 interactions with chain S, 9 interactions with chain R, 3 interactions with chain P, Hydrophobic interactions: Q:Y.23, Q:F.48, S:A.37, S:V.41, S:W.44, R:F.25, R:L.35, R:W.43, R:W.43, R:W.43, R:W.43, P:V.16, P:I.31, P:I.31 pi-Stacking: R:H.32, R:H.32 Metal complexes: R:H.32 BCL.73: 20 residues within 4Å: Chain R: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain S: F.30, S.31, A.34, H.38, V.41, Y.42, W.47, F.48 Chain T: W.43 Ligands: BCL.70, SPO.71, BCL.74, SPO.76 12 PLIP interactions: 10 interactions with chain S, 2 interactions with chain R, Hydrophobic interactions: S:F.30, S:A.34, S:V.41, S:W.47, S:W.47, S:W.47, S:W.47, S:F.48, S:F.48, R:I.31, R:Y.41 Metal complexes: S:H.38 BCL.74: 23 residues within 4Å: Chain R: I.7, F.23, I.31 Chain S: H.20, Y.23, F.48 Chain T: G.21, L.24, F.25, A.28, H.32, W.43 Chain U: F.30, V.33, A.34, A.37, H.38, V.41, W.44 Ligands: SPO.71, BCL.73, SPO.76, BCL.77 17 PLIP interactions: 5 interactions with chain R, 3 interactions with chain U, 7 interactions with chain T, 2 interactions with chain S, Hydrophobic interactions: R:I.7, R:I.7, R:F.23, R:I.31, R:I.31, U:A.37, U:V.41, U:W.44, T:L.24, T:W.43, T:W.43, T:W.43, T:W.43, S:Y.23, S:F.48 pi-Stacking: T:H.32 Metal complexes: T:H.32 BCL.77: 18 residues within 4Å: Chain T: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain U: F.30, A.34, I.35, H.38, Y.42, W.47, F.48 Chain V: W.43 Ligands: BCL.74, SPO.75, BCL.80 11 PLIP interactions: 2 interactions with chain T, 9 interactions with chain U, Hydrophobic interactions: T:I.31, T:Y.41, U:F.30, U:A.34, U:I.35, U:I.35, U:Y.42, U:W.47, U:W.47, U:W.47 Metal complexes: U:H.38 BCL.80: 20 residues within 4Å: Chain T: V.16, Q.20, I.31 Chain U: Y.23, F.48 Chain V: G.21, L.24, F.25, A.28, H.32, W.43 Chain W: F.30, V.33, A.34, A.37, H.38, V.41 Ligands: SPO.75, BCL.77, BCL.83 10 PLIP interactions: 5 interactions with chain V, 1 interactions with chain U, 3 interactions with chain T, 1 interactions with chain W, Hydrophobic interactions: V:L.24, V:F.25, V:W.43, V:W.43, U:F.48, T:V.16, T:I.31, T:I.31, W:A.37 Metal complexes: V:H.32 BCL.83: 16 residues within 4Å: Chain V: L.24, L.27, A.28, I.31, H.32, L.35 Chain W: F.30, S.31, A.34, I.35, H.38, W.47, F.48 Ligands: BCL.80, SPO.82, BCL.84 12 PLIP interactions: 9 interactions with chain W, 3 interactions with chain V, Hydrophobic interactions: W:F.30, W:A.34, W:I.35, W:W.47, W:W.47, W:W.47, W:W.47, W:F.48, V:I.31, V:I.31, V:L.35 Metal complexes: W:H.38 BCL.84: 10 residues within 4Å: Chain V: Q.20, F.23, I.31 Chain W: Y.23 Chain X: F.25, A.28, H.32 Ligands: PGV.81, SPO.82, BCL.83 6 PLIP interactions: 3 interactions with chain V, 3 interactions with chain X, Hydrophobic interactions: V:Q.20, V:F.23, V:I.31 pi-Stacking: X:H.32 pi-Cation interactions: X:H.32 Metal complexes: X:H.32

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.2: 35 residues within 4Å: Chain A: T.38, F.41, A.42, G.45, I.46, I.49, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.128, Y.148, G.149, I.150, H.153, S.237, L.238, V.241 Chain B: Y.210, A.213, L.214, A.217, M.218, W.252, M.256 Ligands: BCL.1, BCL.10, U10.19, PTY.43 18 PLIP interactions: 15 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.46, A:I.49, A:A.93, A:W.100, A:A.120, A:F.121, A:F.121, A:F.121, A:F.123, A:A.124, A:Y.148, A:Y.148, A:L.238, A:V.241, A:V.241, B:Y.210, B:A.213, B:A.217 BPH.12: 23 residues within 4Å: Chain A: F.181, A.184, L.185, A.188, L.189, F.216, L.219, V.220 Chain B: S.59, G.63, F.67, A.125, V.126, W.129, T.146, A.149, F.150, A.153, A.273, V.274, T.277 Ligands: BCL.9, BCL.11 15 PLIP interactions: 4 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:F.181, A:A.184, A:L.185, A:A.188, B:F.67, B:F.67, B:F.67, B:A.125, B:W.129, B:A.149, B:F.150, B:F.150, B:F.150, B:T.277 pi-Stacking: B:F.150

4 x U10: UBIQUINONE-10(Non-covalent)

U10.3: 20 residues within 4Å: Chain A: I.175, T.178, F.179, T.182, L.189, H.190, L.193, E.212, D.213, F.216, Y.222, S.223, I.224, G.225, T.226, I.229, L.232, L.236 Ligands: U10.4, LMT.22 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.175, A:T.178, A:F.179, A:T.182, A:L.189, A:L.193, A:F.216, A:F.216, A:Y.222, A:I.224, A:I.229, A:I.229, A:L.232, A:L.236 Hydrogen bonds: A:I.224, A:G.225 U10.4: 11 residues within 4Å: Chain A: T.178, W.263, W.265, W.266 Chain B: L.86, R.87, L.89, F.90 Ligands: U10.3, LMT.7, BCL.9 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.89, B:F.90, B:F.90, A:W.266 Hydrogen bonds: B:L.89, B:F.90 U10.19: 28 residues within 4Å: Chain A: V.26, F.29, V.31, G.35, F.39, W.100 Chain B: L.214, M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, A.260, M.262, I.265, W.268 Chain F: A.19 Chain H: V.22 Ligands: BCL.1, BPH.2, BCL.10, PTY.25, PGV.42, PTY.43 19 PLIP interactions: 9 interactions with chain B, 9 interactions with chain A, 1 interactions with chain H Hydrophobic interactions: B:L.214, B:M.218, B:W.252, B:F.258, B:A.260, B:I.265, B:I.265, B:W.268, A:V.26, A:F.29, A:F.29, A:F.29, A:F.29, A:F.29, A:F.39, A:F.39, A:F.39, H:V.22 Hydrogen bonds: B:A.260 U10.38: 27 residues within 4Å: Chain A: V.36, F.40, F.41, I.91 Chain D: F.4, I.7, F.23, L.26, L.27, V.29, M.30 Chain E: Y.23 Chain F: F.17, V.18, G.21, V.22, F.25 Chain G: G.26, L.29, V.33 Chain Y: F.37 Ligands: LMT.28, LMT.31, BCL.32, SPO.33, BCL.34, SPO.35 16 PLIP interactions: 4 interactions with chain D, 4 interactions with chain G, 6 interactions with chain A, 2 interactions with chain F Hydrophobic interactions: D:F.4, D:I.7, D:F.23, D:L.26, G:L.29, G:L.29, G:V.33, G:V.33, A:V.36, A:F.40, A:F.40, A:F.40, A:F.41, A:I.91, F:F.25, F:F.25

8 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)

PGV.5: 12 residues within 4Å: Chain A: I.46, A.50, G.57, T.58, W.59, N.60, P.61, I.64 Chain J: L.33 Ligands: PGV.20, LMT.49, LMT.54 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.46, A:A.50, A:W.59, A:W.59, A:P.61, A:I.64 Hydrogen bonds: A:T.58, A:W.59, A:N.60 PGV.18: 16 residues within 4Å: Chain B: L.55, L.58, F.123, V.124, W.127, S.128, W.130, G.131, Y.134 Chain R: V.18, A.19, V.22, F.23, L.26 Chain T: F.25 Ligands: PGV.66 12 PLIP interactions: 5 interactions with chain R, 5 interactions with chain B, 2 interactions with chain T Hydrophobic interactions: R:A.19, R:V.22, R:L.26, R:L.26, R:L.26, B:L.55, B:L.58, B:W.127, B:W.127, B:W.127, T:F.25, T:F.25 PGV.20: 18 residues within 4Å: Chain A: I.49, P.61, Q.62, Y.148, I.150, W.151 Chain B: P.200, L.204, A.207, H.301, M.303 Chain C: N.9, Y.18, W.21 Ligands: PGV.5, BCL.10, LMT.23, PTY.25 12 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: C:W.21, A:I.49, A:P.61, A:Q.62, A:W.151, B:L.204, B:A.207 Hydrogen bonds: C:N.9, C:Y.18, A:Q.62, B:H.301 Salt bridges: B:H.301 PGV.41: 18 residues within 4Å: Chain C: N.52, Q.53, G.54 Chain H: F.11, R.15, V.16, A.19, F.23 Chain J: R.14, R.15, V.18, G.21, V.22, F.25 Ligands: PGV.42, PTY.43, SPO.48, BCL.50 8 PLIP interactions: 3 interactions with chain C, 3 interactions with chain J, 2 interactions with chain H Hydrogen bonds: C:N.52, C:Q.53, C:G.54, J:R.14 Hydrophobic interactions: J:V.22, J:F.25, H:F.23 Salt bridges: H:R.15 PGV.42: 24 residues within 4Å: Chain A: A.1, V.26, G.27, F.39 Chain C: N.44, N.52, E.94 Chain F: F.11, R.15, A.19, F.23 Chain H: D.12, R.14, R.15, V.18, A.19, G.21, V.22, F.25, L.26 Ligands: U10.19, BCL.40, PGV.41, PTY.43 18 PLIP interactions: 5 interactions with chain F, 1 interactions with chain C, 9 interactions with chain H, 3 interactions with chain A Hydrophobic interactions: F:F.11, F:A.19, F:F.23, H:V.18, H:V.18, H:A.19, H:V.22, H:L.26, A:F.39 Salt bridges: F:R.15, F:R.15, H:R.14, H:R.15 Hydrogen bonds: C:N.44, H:D.12, H:R.14, A:A.1, A:A.1 PGV.57: 17 residues within 4Å: Chain C: K.60 Chain L: F.11, D.12, R.15, V.16, F.23 Chain N: R.14, R.15, A.19, G.21, V.22, F.23, F.25, L.26 Ligands: CDL.17, CDL.26, BCL.60 11 PLIP interactions: 6 interactions with chain N, 4 interactions with chain L, 1 interactions with chain C Hydrophobic interactions: N:R.15, N:A.19, N:V.22, N:F.23, N:F.25, N:L.26, L:V.16, L:F.23 Salt bridges: L:R.15, L:R.15, C:K.60 PGV.66: 15 residues within 4Å: Chain B: W.127, W.130, Y.134, Q.138 Chain P: F.11, D.12, R.15, V.16, A.19 Chain R: V.18, G.21, V.22, F.25 Ligands: PGV.18, BCL.70 7 PLIP interactions: 1 interactions with chain P, 2 interactions with chain R, 4 interactions with chain B Hydrogen bonds: P:D.12, B:Y.134, B:Q.138 Hydrophobic interactions: R:V.22, R:F.25, B:W.127, B:W.130 PGV.81: 13 residues within 4Å: Chain V: F.11, R.15, V.16, A.19 Chain X: R.14, R.15, V.18, G.21, V.22, F.25, L.26 Ligands: SPO.14, BCL.84 6 PLIP interactions: 5 interactions with chain X, 1 interactions with chain V Hydrophobic interactions: X:V.22, X:F.25, X:L.26, X:L.26 Hydrogen bonds: X:R.15, V:R.15

4 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.6: 7 residues within 4Å: Chain A: A.101, L.102, V.105, Y.115, P.118, F.119 Ligands: LDA.21 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.101, A:L.102, A:V.105, A:V.105, A:Y.115, A:Y.115 LDA.21: 8 residues within 4Å: Chain A: Y.115, H.116, F.119 Chain B: E.2, Q.4, I.6 Chain C: N.206 Ligands: LDA.6 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Q.4, B:I.6, A:F.119, A:F.119 Salt bridges: B:E.2 LDA.78: 9 residues within 4Å: Chain B: I.72, Y.76, W.80, P.108, L.109, K.110 Chain V: L.36, S.37, N.42 8 PLIP interactions: 2 interactions with chain V, 6 interactions with chain B Hydrophobic interactions: V:L.36, B:I.72, B:Y.76, B:W.80, B:L.109, B:L.109, B:K.110 Hydrogen bonds: V:N.42 LDA.85: 3 residues within 4Å: Chain A: V.17 Chain D: V.22 Chain Y: W.32 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain Y, 1 interactions with chain A Hydrophobic interactions: D:V.22, D:V.22, Y:W.32, Y:W.32, A:V.17

17 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.7: 9 residues within 4Å: Chain A: P.171, M.174, I.175, W.262, W.263, W.265 Chain B: F.90 Ligands: U10.4, LMT.8 Ligand excluded by PLIP LMT.8: 10 residues within 4Å: Chain A: I.175, F.243, L.246, I.250, I.254, W.255, F.256, D.257, W.262 Ligands: LMT.7 Ligand excluded by PLIP LMT.15: 11 residues within 4Å: Chain B: L.167, M.168, L.286, G.288, T.289, V.290 Chain C: M.1, V.2, L.12 Ligands: LMT.64, LMT.65 Ligand excluded by PLIP LMT.16: 13 residues within 4Å: Chain B: G.102, L.103, I.166 Chain P: M.30, I.34 Chain R: V.29, L.33, L.36, P.39, N.42, E.45 Ligands: LMT.64, SPO.68 Ligand excluded by PLIP LMT.22: 11 residues within 4Å: Chain A: I.224, L.232 Chain B: F.7, Q.9, L.38, L.39, W.41, F.42 Chain C: G.145, K.146 Ligands: U10.3 Ligand excluded by PLIP LMT.23: 14 residues within 4Å: Chain B: N.300 Chain C: F.7, G.8, N.9, F.10, Y.18, I.22 Chain L: L.26, M.30, L.33, S.37 Ligands: PGV.20, CDL.26, LMT.54 Ligand excluded by PLIP LMT.24: 14 residues within 4Å: Chain C: V.2, V.4, A.6, F.10, D.11, L.12 Chain N: M.30, I.34, S.37, T.38 Chain P: N.42, L.44, E.45 Ligands: LMT.65 Ligand excluded by PLIP LMT.27: 12 residues within 4Å: Chain A: G.76, G.77, Q.87, T.90, I.91, T.94, L.133, W.142 Chain D: L.36, S.37, E.45 Ligands: LMT.28 Ligand excluded by PLIP LMT.28: 14 residues within 4Å: Chain A: L.44, G.77, A.78, P.79, I.88, I.91 Chain D: M.30, L.33, I.34, S.37, P.39 Chain F: E.45 Ligands: LMT.27, U10.38 Ligand excluded by PLIP LMT.31: 7 residues within 4Å: Chain D: M.1, S.2 Chain E: H.20, M.24, W.28 Chain G: L.29 Ligands: U10.38 Ligand excluded by PLIP LMT.36: 8 residues within 4Å: Chain F: M.1, S.2, K.3, F.4 Chain G: H.20, M.24, W.28 Ligands: BCL.40 Ligand excluded by PLIP LMT.45: 5 residues within 4Å: Chain H: M.1 Chain I: H.20, M.24, W.28 Ligands: BCL.50 Ligand excluded by PLIP LMT.49: 8 residues within 4Å: Chain A: W.59 Chain H: M.30, I.34 Chain J: L.33, L.36, N.42, E.45 Ligands: PGV.5 Ligand excluded by PLIP LMT.51: 6 residues within 4Å: Chain J: M.1, S.2, F.4 Chain K: H.20, M.24 Ligands: BCL.55 Ligand excluded by PLIP LMT.54: 12 residues within 4Å: Chain J: L.26, V.29, M.30, I.34, S.37, T.38 Chain L: L.36, S.37, N.42, E.45 Ligands: PGV.5, LMT.23 Ligand excluded by PLIP LMT.64: 9 residues within 4Å: Chain B: L.167, L.285 Chain P: L.33, I.34, S.37, T.38 Ligands: LMT.15, LMT.16, LMT.65 Ligand excluded by PLIP LMT.65: 9 residues within 4Å: Chain C: L.12 Chain N: M.30 Chain P: L.33, L.36, S.37, N.42 Ligands: LMT.15, LMT.24, LMT.64 Ligand excluded by PLIP

1 x FE: FE (III) ION(Non-covalent)

FE.13: 5 residues within 4Å: Chain A: H.190, H.230 Chain B: H.219, E.234, H.266 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Metal complexes: A:H.190, A:H.230, B:H.219, B:E.234, B:H.266

19 x SPO: SPHEROIDENE(Non-covalent)

SPO.14: 24 residues within 4Å: Chain B: F.67, F.68, I.70, G.71, W.75, F.105, W.115, L.116, S.119, F.120, M.122, W.157, G.161, F.162, W.171, V.175, Y.177, G.178, I.179, H.182 Chain R: M.30 Chain T: L.33 Ligands: BCL.9, PGV.81 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain T Hydrophobic interactions: B:F.67, B:F.67, B:F.67, B:F.68, B:I.70, B:F.105, B:W.115, B:L.116, B:F.120, B:W.157, B:F.162, B:W.171, B:V.175, B:Y.177, B:I.179, T:L.33, T:L.33 SPO.30: 26 residues within 4Å: Chain D: Q.20, L.24, L.27, M.30, I.31, I.34 Chain E: V.22, Y.23, S.25, G.26, L.27, L.29, F.30 Chain F: F.25, A.28, V.29, H.32, L.33 Chain Y: R.19, V.22, A.23, M.26 Ligands: BCL.29, BCL.32, SPO.33, BCL.34 16 PLIP interactions: 4 interactions with chain Y, 5 interactions with chain D, 4 interactions with chain E, 3 interactions with chain F Hydrophobic interactions: Y:R.19, Y:R.19, Y:V.22, Y:A.23, D:L.24, D:L.27, D:L.27, D:I.31, D:I.34, E:L.27, E:L.27, E:L.29, E:F.30, F:F.25, F:A.28, F:H.32 SPO.33: 15 residues within 4Å: Chain E: F.48 Chain F: F.17, Q.20 Chain G: F.30, V.33, A.37, A.40, V.41, I.43, W.44 Ligands: SPO.30, BCL.32, BCL.34, SPO.35, U10.38 10 PLIP interactions: 6 interactions with chain G, 3 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: G:F.30, G:F.30, G:V.33, G:A.40, G:V.41, G:I.43, E:F.48, E:F.48, E:F.48, F:F.17 SPO.35: 29 residues within 4Å: Chain D: F.4, K.6, I.7, I.10 Chain E: L.6 Chain F: F.17, Q.20, F.23, L.24, L.27, M.30, I.34 Chain G: E.18, L.19, V.22, Y.23, G.26, L.27, F.30 Chain H: F.25, A.28, V.29, H.32, L.33 Ligands: SPO.33, U10.38, BCL.39, BCL.40, SPO.44 24 PLIP interactions: 7 interactions with chain F, 8 interactions with chain G, 4 interactions with chain D, 4 interactions with chain H, 1 interactions with chain E Hydrophobic interactions: F:F.17, F:F.23, F:F.23, F:L.24, F:L.24, F:L.27, F:I.34, G:E.18, G:L.19, G:L.19, G:V.22, G:V.22, G:L.27, G:L.27, G:F.30, D:F.4, D:K.6, D:K.6, D:I.7, H:F.25, H:A.28, H:V.29, H:H.32, E:L.6 SPO.37: 28 residues within 4Å: Chain F: F.4, K.6, I.7, I.10 Chain G: L.6 Chain H: F.17, Q.20, F.23, L.24, L.27, M.30, I.34 Chain I: L.19, V.22, Y.23, G.26, L.27, F.30 Chain J: F.25, A.28, V.29, H.32, L.33 Ligands: BCL.40, SPO.44, BCL.46, SPO.48, BCL.50 17 PLIP interactions: 7 interactions with chain I, 4 interactions with chain F, 4 interactions with chain H, 2 interactions with chain J Hydrophobic interactions: I:L.19, I:V.22, I:V.22, I:Y.23, I:L.27, I:L.27, I:F.30, F:F.4, F:K.6, F:K.6, F:I.10, H:F.23, H:F.23, H:L.24, H:I.34, J:A.28, J:H.32 SPO.44: 14 residues within 4Å: Chain G: Y.42, F.48 Chain H: F.17, Q.20, Y.51 Chain I: V.33, A.37, A.40, V.41, W.44 Ligands: SPO.35, SPO.37, BCL.39, BCL.40 8 PLIP interactions: 3 interactions with chain I, 3 interactions with chain G, 2 interactions with chain H Hydrophobic interactions: I:V.33, I:A.40, I:W.44, G:F.48, G:F.48, H:F.17 Hydrogen bonds: G:Y.42, H:Y.51 SPO.47: 25 residues within 4Å: Chain H: F.4, K.6, I.7, I.10 Chain I: D.5 Chain J: F.17, Q.20, F.23, L.24, L.27, M.30, I.31 Chain K: E.18, L.19, V.22, Y.23, G.26, L.27, F.30 Chain L: F.25, A.28, H.32, L.33 Ligands: SPO.48, BCL.55 19 PLIP interactions: 5 interactions with chain H, 5 interactions with chain K, 3 interactions with chain L, 6 interactions with chain J Hydrophobic interactions: H:F.4, H:K.6, H:K.6, H:I.7, H:I.10, K:E.18, K:V.22, K:L.27, K:L.27, K:F.30, L:F.25, L:A.28, L:H.32, J:F.17, J:F.23, J:F.23, J:L.24, J:L.27, J:I.31 SPO.48: 13 residues within 4Å: Chain I: Y.42, F.48 Chain J: F.17, Q.20 Chain K: V.33, A.37, A.40, W.44 Ligands: SPO.37, PGV.41, BCL.46, SPO.47, BCL.50 7 PLIP interactions: 4 interactions with chain I, 1 interactions with chain J, 2 interactions with chain K Hydrophobic interactions: I:F.48, I:F.48, I:F.48, J:F.17, K:V.33, K:A.40 Hydrogen bonds: I:Y.42 SPO.53: 14 residues within 4Å: Chain K: Y.42, F.48 Chain L: F.17, Q.20, K.50 Chain M: F.30, V.33, A.37, A.40, V.41, W.44 Ligands: BCL.52, BCL.55, SPO.56 8 PLIP interactions: 4 interactions with chain M, 3 interactions with chain K, 1 interactions with chain L Hydrophobic interactions: M:F.30, M:V.33, M:A.40, M:V.41, K:F.48, K:F.48, K:F.48 Hydrogen bonds: L:K.50 SPO.56: 25 residues within 4Å: Chain J: F.4, K.6, I.7, I.10 Chain K: L.6 Chain L: Q.20, F.23, L.24, L.27, M.30 Chain M: E.18, L.19, V.22, Y.23, G.26, L.27, F.30 Chain N: F.25, V.29, H.32, L.33 Ligands: SPO.53, BCL.59, BCL.60, SPO.61 24 PLIP interactions: 10 interactions with chain M, 3 interactions with chain N, 6 interactions with chain J, 5 interactions with chain L Hydrophobic interactions: M:E.18, M:L.19, M:L.19, M:V.22, M:V.22, M:V.22, M:Y.23, M:L.27, M:L.27, M:F.30, N:F.25, N:V.29, N:H.32, J:F.4, J:K.6, J:K.6, J:K.6, J:I.7, J:I.10, L:F.23, L:F.23, L:L.24, L:L.24, L:L.27 SPO.58: 25 residues within 4Å: Chain L: F.4, K.6, I.7, I.10 Chain M: L.6 Chain N: F.17, Q.20, F.23, L.24, L.27 Chain O: E.18, L.19, V.22, Y.23, G.26, L.27, F.30 Chain P: F.25, A.28, V.29, H.32, L.33 Ligands: BCL.62, SPO.63, BCL.67 24 PLIP interactions: 10 interactions with chain O, 1 interactions with chain M, 5 interactions with chain N, 4 interactions with chain L, 4 interactions with chain P Hydrophobic interactions: O:E.18, O:L.19, O:L.19, O:V.22, O:V.22, O:V.22, O:Y.23, O:L.27, O:L.27, O:F.30, M:L.6, N:F.17, N:F.23, N:F.23, N:L.24, N:L.27, L:F.4, L:K.6, L:I.7, L:I.10, P:F.25, P:A.28, P:V.29, P:H.32 SPO.61: 13 residues within 4Å: Chain M: F.48 Chain N: F.17, Q.20, K.50 Chain O: F.30, V.33, A.37, A.40, V.41, W.44 Ligands: SPO.56, BCL.59, BCL.60 8 PLIP interactions: 4 interactions with chain O, 1 interactions with chain N, 3 interactions with chain M Hydrophobic interactions: O:F.30, O:V.33, O:A.40, O:V.41, N:F.17, M:F.48, M:F.48, M:F.48 SPO.63: 15 residues within 4Å: Chain O: F.48 Chain P: F.17, Q.20, G.21, K.50 Chain Q: F.30, V.33, A.37, A.40, V.41, W.44 Ligands: SPO.58, BCL.62, BCL.67, SPO.68 7 PLIP interactions: 4 interactions with chain Q, 3 interactions with chain O Hydrophobic interactions: Q:F.30, Q:V.33, Q:A.40, Q:V.41, O:F.48, O:F.48, O:F.48 SPO.68: 27 residues within 4Å: Chain N: K.3, F.4, K.6, I.7, I.10 Chain O: L.6 Chain P: F.17, Q.20, L.27, M.30 Chain Q: E.18, L.19, V.22, Y.23, G.26, L.27, F.30 Chain R: A.28, V.29, H.32, L.33, L.36 Ligands: LMT.16, SPO.63, BCL.69, BCL.70, SPO.72 18 PLIP interactions: 6 interactions with chain Q, 4 interactions with chain R, 2 interactions with chain P, 5 interactions with chain N, 1 interactions with chain O Hydrophobic interactions: Q:E.18, Q:L.19, Q:V.22, Q:Y.23, Q:L.27, Q:F.30, R:A.28, R:V.29, R:H.32, R:L.36, P:F.17, P:L.27, N:F.4, N:K.6, N:I.7, N:I.7, N:I.10, O:L.6 SPO.71: 27 residues within 4Å: Chain P: K.6, I.7, I.10 Chain Q: L.6 Chain R: F.17, Q.20, F.23, L.24, L.27, I.31, I.34 Chain S: E.18, L.19, V.22, Y.23, G.26, L.27, F.30 Chain T: F.25, V.29, H.32, L.33 Ligands: BCL.70, SPO.72, BCL.73, BCL.74, SPO.76 18 PLIP interactions: 6 interactions with chain S, 3 interactions with chain T, 5 interactions with chain R, 1 interactions with chain Q, 3 interactions with chain P Hydrophobic interactions: S:E.18, S:V.22, S:V.22, S:L.27, S:L.27, S:F.30, T:F.25, T:V.29, T:H.32, R:F.17, R:F.23, R:L.27, R:I.31, R:I.34, Q:L.6, P:K.6, P:K.6, P:I.7 SPO.72: 14 residues within 4Å: Chain Q: Y.42, F.48 Chain R: F.17, G.21, K.50 Chain S: V.33, A.37, A.40, V.41, W.44 Ligands: SPO.68, BCL.69, BCL.70, SPO.71 11 PLIP interactions: 3 interactions with chain Q, 2 interactions with chain R, 6 interactions with chain S Hydrophobic interactions: Q:F.48, Q:F.48, Q:F.48, R:F.17, S:V.33, S:A.37, S:A.40, S:V.41, S:W.44, S:W.44 Hydrogen bonds: R:K.50 SPO.75: 27 residues within 4Å: Chain R: F.4, K.6, I.7, I.10 Chain T: F.17, Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain U: E.18, L.19, V.22, Y.23, G.26, L.27, F.30 Chain V: F.25, A.28, V.29, H.32, L.33 Ligands: SPO.76, BCL.77, BCL.80 21 PLIP interactions: 5 interactions with chain R, 8 interactions with chain T, 4 interactions with chain U, 4 interactions with chain V Hydrophobic interactions: R:F.4, R:K.6, R:K.6, R:I.7, R:I.7, T:F.17, T:F.23, T:F.23, T:L.24, T:L.24, T:L.27, T:L.27, T:I.31, U:L.19, U:V.22, U:V.22, U:F.30, V:F.25, V:A.28, V:V.29, V:H.32 SPO.76: 13 residues within 4Å: Chain S: F.48 Chain T: Q.20, K.50, Y.51 Chain U: V.33, A.37, A.40, V.41, W.44 Ligands: SPO.71, BCL.73, BCL.74, SPO.75 7 PLIP interactions: 4 interactions with chain U, 1 interactions with chain T, 2 interactions with chain S Hydrophobic interactions: U:V.33, U:A.40, U:V.41, U:W.44, S:F.48, S:F.48 Hydrogen bonds: T:K.50 SPO.82: 20 residues within 4Å: Chain T: F.4, K.6, I.7, I.10 Chain V: Q.20, F.23, L.24, L.27, M.30 Chain W: E.18, L.19, V.22, Y.23, G.26 Chain X: F.25, V.29, H.32, L.33 Ligands: BCL.83, BCL.84 15 PLIP interactions: 6 interactions with chain W, 3 interactions with chain T, 4 interactions with chain V, 2 interactions with chain X Hydrophobic interactions: W:L.19, W:V.22, W:V.22, W:V.22, W:Y.23, W:Y.23, T:F.4, T:F.4, T:I.10, V:F.23, V:L.24, V:L.27, V:L.27, X:F.25, X:V.29

3 x CDL: CARDIOLIPIN(Non-covalent)

CDL.17: 21 residues within 4Å: Chain A: N.199, P.200, E.201 Chain B: G.143, K.144, H.145, W.148, L.151, S.152, W.155, R.267, W.271, L.278, I.282 Chain C: I.22, F.23, G.26, L.27, Y.30 Ligands: CDL.26, PGV.57 21 PLIP interactions: 14 interactions with chain B, 7 interactions with chain C Hydrophobic interactions: B:W.148, B:W.148, B:W.148, B:W.155, B:W.155, B:W.155, B:W.155, B:L.278, B:I.282, C:I.22, C:F.23, C:F.23, C:F.23, C:L.27, C:Y.30, C:Y.30 Hydrogen bonds: B:K.144 Salt bridges: B:H.145, B:H.145, B:H.145, B:R.267 CDL.26: 25 residues within 4Å: Chain C: I.22, A.25, G.26, Y.29, P.55, P.57, K.60 Chain J: F.11, D.12, R.15, V.16, A.19 Chain L: R.14, R.15, V.18, A.19, V.22, F.23, L.26, L.27, M.30 Chain N: F.25 Ligands: CDL.17, LMT.23, PGV.57 15 PLIP interactions: 3 interactions with chain J, 3 interactions with chain L, 2 interactions with chain N, 7 interactions with chain C Hydrophobic interactions: J:A.19, L:V.22, L:L.26, N:F.25, N:F.25, C:I.22, C:Y.29, C:Y.29, C:P.55 Hydrogen bonds: J:D.12, C:Y.29, C:Y.29, C:K.60 Salt bridges: J:R.15, L:R.15 CDL.79: 15 residues within 4Å: Chain A: V.220, G.221, Y.222 Chain B: A.27, S.30, G.31, V.32, G.33, P.34, G.48, I.50 Chain T: R.15 Chain V: R.14, R.15, V.18 7 PLIP interactions: 3 interactions with chain V, 1 interactions with chain T, 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: V:R.15, B:G.31, B:I.50 Salt bridges: V:R.14, V:R.15, T:R.15 Hydrophobic interactions: A:Y.222

2 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.25: 23 residues within 4Å: Chain A: F.29 Chain B: F.208, R.253, M.256, G.257, F.258, W.268, W.271, M.272, L.275 Chain C: I.28, L.31, Q.32, M.36, Y.40, Q.53, G.54, P.55, F.56 Ligands: BCL.10, U10.19, PGV.20, PTY.43 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:F.258, B:F.258, B:W.268, B:W.271, B:L.275, C:I.28, C:L.31 Hydrogen bonds: B:R.253, B:R.253, C:Y.40, C:Y.40, C:F.56 PTY.43: 17 residues within 4Å: Chain A: P.28, F.29, F.39, A.42, A.43 Chain B: R.253 Chain C: N.52, Q.53, G.54, P.55 Chain H: R.15 Ligands: BCL.1, BPH.2, U10.19, PTY.25, PGV.41, PGV.42 9 PLIP interactions: 4 interactions with chain A, 2 interactions with chain H, 3 interactions with chain C Hydrophobic interactions: A:F.39, A:F.39, A:A.42, A:A.43, C:P.55 Salt bridges: H:R.15, H:R.15 Hydrogen bonds: C:N.52, C:G.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tani, K. et al., Asymmetric structure of the native Rhodobacter sphaeroides dimeric LH1-RC complex. Nat Commun (2022)

Release Date

2022-04-27

Peptides

Photosynthetic reaction center L subunit: A
Reaction center protein M chain: B
Photosynthetic reaction center subunit H: C
Antenna pigment protein alpha chain: DFHJLNPRTVX
Antenna pigment protein beta chain: EGIKMOQSUW
PufX: Y

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
M

C
H

D
A

F
D

H
F

J
I

L
K

N
O

P
Q

R
S

T
V

V
Y

X
1

E
B

G
E

I
G

K
J

M
N

O
P

Q
R

S
T

U
W

W
Z

Y
X

Membrane

We predict this structure to be a membrane protein.
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Photosynthetic reaction center L subunit

Reaction center protein M chain

Photosynthetic reaction center subunit H

Antenna pigment protein alpha chain

Antenna pigment protein beta chain

PufX

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