SMTL ID : 7xtp.2 (1 other biounit)

eIF4E in Complex with a Disulphide-Free Autonomous VH Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MGO: [[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE(Non-covalent)

MGO.1: 6 residues within 4Å: Chain A: W.56, M.101, W.102, E.103, R.157, K.162 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:W.102, A:E.103, A:E.103 Water bridges: A:R.112, A:N.155, A:N.155, A:N.155, A:R.157, A:R.157, A:K.162 Salt bridges: A:R.157, A:R.157, A:K.162, A:K.162 pi-Stacking: A:W.56, A:W.56, A:W.56, A:W.56, A:W.102, A:W.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frosi, Y. et al., Engineering an autonomous VH domain to modulate intracellular pathways and to interrogate the eIF4F complex. Nat Commun (2022)

Release Date

2022-07-27

Peptides

Eukaryotic translation initiation factor 4E: A
VH-S4ss: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Eukaryotic translation initiation factor 4E

VH-S4ss

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