SMTL ID : 7y4i.1

Crystal structure of SPINDLY in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: S.496, Y.499, N.661, K.665, K.689, L.721, I.722, L.723, F.724, N.725, H.728, G.746, T.747, T.748, T.749, E.752 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.496, A:N.662, A:K.689, A:I.722, A:I.722, A:L.723, A:T.747, A:T.747, A:T.747, A:T.748, A:T.748, A:T.749, A:E.752 Salt bridges: A:K.665, A:K.665 pi-Stacking: A:H.728, A:H.728

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Structural insights into mechanism and specificity of the plant protein O-fucosyltransferase SPINDLY. Nat Commun (2022)

Release Date

2022-12-07

Peptides

Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY