SMTL ID : 7z2d.1

Cryo-EM structure of HIV-1 reverse transcriptase with a DNA aptamer in complex with rilpivirine

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x T27: 4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile(Non-covalent)

T27.1: 13 residues within 4Å: Chain A: L.102, K.103, K.105, V.181, Y.183, Y.190, F.229, W.231, L.236, H.237, P.238, Y.320 Chain B: E.138 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.102, A:L.102, A:K.105, A:Y.183, A:Y.183, A:Y.183, A:Y.190, A:Y.190, A:W.231, A:L.236 Hydrogen bonds: A:K.103, A:K.103 pi-Stacking: A:Y.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A.K. et al., Cryo-EM structures of wild-type and E138K/M184I mutant HIV-1 RT/DNA complexed with inhibitors doravirine and rilpivirine. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-07-20

Peptides

Reverse transcriptase/ribonuclease H: A
Reverse transcriptase/ribonuclease H: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

Reverse transcriptase/ribonuclease H

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