SMTL ID : 8bsh.1

COPII inner coat

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain C: T.37, P.53, T.54 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.37, C:T.54

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 20 residues within 4Å: Chain A: R.722, L.746 Chain C: D.32, N.33, A.34, G.35, K.36, T.37, T.38, P.53, T.54, L.74, G.75, G.76, K.133, D.135, S.172, V.173, V.174 Ligands: MG.1 17 PLIP interactions: 14 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:N.33, C:A.34, C:G.35, C:G.35, C:K.36, C:T.37, C:T.37, C:T.38, C:T.54, C:K.133, C:S.172, C:V.173, C:V.174, A:R.722, A:R.722 Salt bridges: C:D.135, A:R.722

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zivanov, J. et al., A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0. Elife (2022)

Release Date

2023-01-18

Peptides

Protein transport protein SEC23: A
SEC24 isoform 1: B
Small COPII coat GTPase SAR1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Protein transport protein SEC23

SEC24 isoform 1

Small COPII coat GTPase SAR1

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