SMTL ID : 8bwy.1

In situ outer dynein arm from Chlamydomonas reinhardtii in a pre-power stroke state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-mer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 10 residues within 4Å: Chain C: P.2838, V.2840, V.2868, G.2869, G.2870, S.2871, G.2872, K.2873, Q.2874, S.2875 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:V.2840, C:V.2840, C:V.2868, C:G.2870, C:S.2871, C:G.2872, C:K.2873, C:Q.2874, C:S.2875 ADP.2: 10 residues within 4Å: Chain C: L.2460, L.2461, G.2494, S.2495, G.2496, T.2497, A.2498, K.2499, T.2500, S.2501 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:L.2461, C:L.2461, C:G.2494, C:G.2496, C:T.2497, C:A.2498, C:K.2499, C:T.2500 ADP.3: 9 residues within 4Å: Chain C: L.1845, C.1846, A.1874, G.1875, T.1876, G.1877, K.1878, T.1879, E.1880 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:C.1846, C:C.1846, C:G.1875, C:T.1876, C:G.1877, C:K.1878, C:T.1879, C:E.1880

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 11 residues within 4Å: Chain C: Y.2129, L.2130, I.2131, G.2160, S.2161, G.2162, K.2163, S.2164, T.2165, A.2302, V.2303 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:I.2131, C:I.2131, C:G.2160, C:S.2161, C:G.2162, C:K.2163, C:S.2164, C:T.2165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimmermann, N. et al., ATP-induced conformational change of axonemal outer dynein arms revealed by cryo-electron tomography. Embo J. (2023)

Release Date

2023-05-10

Peptides

Dynein-1-alpha heavy chain, flagellar inner arm I1 complex protein, putative: A
Outer arm dynein beta heavy chain: B
Dynein heavy chain, outer arm protein: C
Dynein intermediate chain 2: D
Flagellar outer dynein arm intermediate protein, putative: E
Dynein light chain roadblock-type 2 protein: F
Dynein light chain roadblock-type 2 protein: G
Dynein light chain: H
Dynein light chain: I
Dynein light chain: J
Dynein light chain: K
Dynein light chain: L
Dynein light chain: M
Dynein light chain 2A: N
Dynein light chain tctex-type 1 protein: O
Thioredoxin: P
Calmodulin: Q
Docking complex 1/2 protein: RS

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
d

E
e

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
T

R
V

S
x

Dynein-1-alpha heavy chain, flagellar inner arm I1 complex protein, putative

Outer arm dynein beta heavy chain

Dynein heavy chain, outer arm protein

Dynein intermediate chain 2

Flagellar outer dynein arm intermediate protein, putative

Dynein light chain roadblock-type 2 protein

Dynein light chain roadblock-type 2 protein

Dynein light chain

Dynein light chain

Dynein light chain

Dynein light chain

Dynein light chain

Dynein light chain

Dynein light chain 2A

Dynein light chain tctex-type 1 protein

Thioredoxin

Calmodulin

Docking complex 1/2 protein

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