SMTL ID : 8fce.1

HIV-1 Reverse Transcriptase in complex with 7-membered bicyclic core NNRTI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

hetero-1-1-mer

Ligands

1 x XRL: 4-[(9-{4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]benzonitrile(Non-covalent)

XRL.1: 18 residues within 4Å: Chain A: P.95, L.100, K.101, K.103, V.106, V.179, I.180, Y.181, Y.188, P.225, F.227, W.229, L.234, H.235, P.236, Y.318 Chain B: E.138, T.139 16 PLIP interactions: 2 interactions with chain B, 14 interactions with chain A Hydrogen bonds: B:E.138, B:E.138, A:K.101, A:K.101 Hydrophobic interactions: A:P.95, A:L.100, A:L.100, A:K.103, A:V.106, A:Y.181, A:Y.181, A:Y.188, A:Y.188, A:Y.188, A:L.234, A:Y.318

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 7 residues within 4Å: Chain A: G.436, A.437, E.438, N.460, R.461 Chain B: A.288, E.291 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.436, A:A.437, A:A.437, A:N.460, B:E.291 Salt bridges: A:R.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prener, L. et al., Design and Synthesis of Novel HIV-1 NNRTIs with Bicyclic Cores and with Improved Physicochemical Properties. J.Med.Chem. (2023)

Release Date

2023-02-01

Peptides

p66 RT: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

p66 RT

p51 RT

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