SMTL ID : 8itr.1

Crystal structure of lysophosphatidylcholine in complex with human serum albumin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

monomer

Ligands

6 x LPC: [1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE(Non-covalent)

LPC.1: 16 residues within 4Å: Chain A: S.190, K.193, Q.194, K.197, W.212, R.216, L.217, F.221, L.236, V.239, H.240, L.258, I.262, S.285, I.288, A.289 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.212, A:F.221, A:I.262, A:I.288 Hydrogen bonds: A:H.240 Salt bridges: A:K.197, A:H.240 LPC.2: 16 residues within 4Å: Chain A: L.113, R.115, M.121, L.133, Y.136, L.137, I.140, F.147, F.155, A.156, Y.159, F.163, L.180, R.184, G.187, K.188 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:R.115, A:L.133, A:Y.136, A:Y.136, A:L.137, A:I.140, A:A.156, A:Y.159, A:Y.159, A:Y.159, A:Y.159, A:Y.159, A:F.163, A:L.180 Hydrogen bonds: A:L.113, A:Y.159, A:Y.159 Salt bridges: A:R.115 pi-Cation interactions: A:H.144, A:F.155 LPC.3: 21 residues within 4Å: Chain A: R.8, L.12, F.17, L.20, V.21, A.24, E.43, V.44, F.47, L.67, F.68, K.71, Y.148, P.150, L.249, A.252, R.255, A.256, L.281, L.282, S.285 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.21, A:A.24, A:V.44, A:V.44, A:F.47, A:F.47, A:F.68, A:F.68, A:K.71 Hydrogen bonds: A:Y.148 Salt bridges: A:R.8 LPC.4: 21 residues within 4Å: Chain A: S.340, V.342, R.346, P.382, L.385, I.386, N.389, Y.409, L.421, M.444, A.447, E.448, L.455, L.458, L.479, V.480, R.482, R.483, P.484, F.486, S.487 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.409, A:Y.409, A:L.421, A:L.455, A:L.458, A:F.486, A:F.486 Hydrogen bonds: A:S.340, A:R.483 Salt bridges: A:R.346, A:R.483 LPC.5: 15 residues within 4Å: Chain A: Y.399, N.403, F.505, E.516, K.523, A.526, L.527, L.530, V.545, M.546, F.549, A.550, V.553, L.573, S.577 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.505, A:F.505, A:K.523, A:A.526, A:L.527, A:L.530, A:V.545, A:F.549, A:F.549, A:L.573 Hydrogen bonds: A:N.403 Salt bridges: A:E.516, A:K.523, A:K.523 LPC.6: 16 residues within 4Å: Chain A: F.204, R.207, A.208, K.210, A.211, V.214, S.230, T.234, D.322, L.325, L.345, A.348, K.349, E.352, S.478, V.480 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.214, A:L.325, A:A.348 Salt bridges: A:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Crystal structures of human serum albumin in complex with lysophosphatidylcholine. Biophys.J. (2023)

Release Date

2024-01-31

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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