SMTL ID : 8itt.1 (1 other biounit)

Crystal structure of lysophosphatidylcholine in complex with human serum albumin and myristate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

monomer

Ligands

3 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 7 residues within 4Å: Chain A: R.207, A.211, D.322, L.325, L.345, A.348, K.349 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.211, A:D.322, A:L.325, A:A.348 Hydrogen bonds: A:R.207 MYR.2: 9 residues within 4Å: Chain A: R.8, L.12, L.64, Y.148, A.252, R.255, A.256, L.281, S.285 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.12, A:L.64, A:A.256 Hydrogen bonds: A:Y.148, A:S.285, A:S.285 Salt bridges: A:R.255 MYR.3: 9 residues within 4Å: Chain A: K.197, R.216, L.217, R.220, F.221, L.236, H.240, I.288, A.289 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.220, A:F.221, A:I.288, A:A.289 Salt bridges: A:K.197

3 x LPC: [1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE(Non-covalent)

LPC.4: 14 residues within 4Å: Chain A: R.115, L.133, Y.136, L.137, I.140, H.144, F.147, L.152, A.156, Y.159, L.183, R.184, G.187, S.191 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.133, A:L.133, A:Y.136, A:Y.136, A:Y.136, A:L.137, A:L.137, A:A.156, A:Y.159, A:Y.159 Hydrogen bonds: A:Y.159, A:L.183 Salt bridges: A:R.115 pi-Cation interactions: A:H.144 LPC.5: 19 residues within 4Å: Chain A: S.340, V.342, R.346, P.382, L.385, I.386, N.389, F.401, Y.409, L.428, G.432, M.444, A.447, L.451, L.455, L.458, R.483, F.486, S.487 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.409, A:Y.409, A:L.428, A:L.458, A:F.486, A:F.486 Salt bridges: A:R.483 LPC.6: 16 residues within 4Å: Chain A: Y.399, N.403, F.505, F.507, K.523, A.526, L.527, L.530, M.546, A.550, A.551, V.553, E.554, L.573, V.574, S.577 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.505, A:F.507, A:A.526, A:L.527, A:L.527, A:L.530 Salt bridges: A:K.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Crystal structures of human serum albumin in complex with lysophosphatidylcholine. Biophys.J. (2023)

Release Date

2024-01-31

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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