SMTL ID : 8rpg.1

Crystal structure of an alcohol oxidase from Streptomyces hiroshimensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 40 residues within 4Å: Chain A: V.31, G.32, A.33, G.34, S.35, A.36, V.55, E.56, A.57, F.76, W.82, P.100, R.101, G.102, R.103, T.104, G.107, S.108, S.109, N.112, F.113, L.114, M.115, E.238, Q.239, V.240, S.269, A.270, G.271, G.274, L.278, F.476, H.477, D.510, A.511, H.521, T.522, H.523, A.526 Ligands: PGE.2 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:F.76, A:P.100, A:N.112, A:F.476 Hydrogen bonds: A:A.33, A:A.33, A:S.35, A:S.35, A:A.36, A:A.57, A:G.102, A:S.108, A:S.108, A:N.112, A:F.113, A:M.115, A:M.115, A:V.240, A:V.240, A:A.511, A:T.522, A:T.522, A:H.523, A:A.524 Water bridges: A:G.34, A:G.37, A:R.101, A:R.101, A:R.101, A:Q.239, A:T.272 pi-Stacking: A:F.113 pi-Cation interactions: A:H.477

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 7 residues within 4Å: Chain A: F.113, M.115, A.351, L.475, H.477, H.521 Ligands: FAD.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.477, A:H.521

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: H.149, W.150, T.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.149 GOL.4: 5 residues within 4Å: Chain A: D.286, Q.289, P.302, R.306, Q.491 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.306, A:Q.491, A:Q.491 GOL.5: 3 residues within 4Å: Chain A: A.73, H.74, F.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.74, A:F.76 GOL.6: 3 residues within 4Å: Chain A: E.246, D.247, R.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.247, A:D.247 GOL.7: 6 residues within 4Å: Chain A: G.59, A.60, G.79, Y.80, R.103, T.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.59, A:G.59 Water bridges: A:G.79 GOL.8: 3 residues within 4Å: Chain A: R.64, D.330, R.335 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.330, A:R.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cinca-Fernando, P. et al., Discovery, characterization, and synthetic potential of two novel bacterial aryl-alcohol oxidases. Appl.Microbiol.Biotechnol. (2024)

Release Date

2024-11-13

Peptides

Alcohol oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alcohol oxidase