SMTL ID : 8tli.1

THERMOLYSIN (100% ISOPROPANOL SOAKED CRYSTALS)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166, H2O.1

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.138, A:E.177, A:E.187, A:E.190, H2O.1 CA.3: 6 residues within 4Å: Chain A: E.177, K.182, N.183, D.185, E.190 Ligands: CA.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.1, H2O.2 CA.4: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.1, H2O.2, H2O.2 CA.5: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:I.197, A:D.200, H2O.3

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 3 residues within 4Å: Chain A: H.216, S.218, Y.251 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:H.216

11 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.7: 7 residues within 4Å: Chain A: N.112, A.113, H.142, E.143, L.202, R.203 Ligands: IPA.14 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.202 Hydrogen bonds: A:E.143, A:E.143 Water bridges: A:R.203 IPA.8: 6 residues within 4Å: Chain A: Y.81, Y.84, S.92, Y.93, I.100, V.148 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.84, A:I.100, A:V.148 Hydrogen bonds: A:S.92, A:S.92 IPA.9: 4 residues within 4Å: Chain A: L.202, R.203, Y.211, D.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.202 Water bridges: A:D.213 IPA.10: 6 residues within 4Å: Chain A: H.216, Y.251, V.253, D.311, A.312, G.314 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.251, A:V.253 Hydrogen bonds: A:K.316 IPA.11: 5 residues within 4Å: Chain A: W.115, N.116, G.117, D.150 Ligands: IPA.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.150 IPA.12: 4 residues within 4Å: Chain A: S.5, V.7, N.21, T.34 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.34 Hydrogen bonds: A:N.21 IPA.13: 5 residues within 4Å: Chain A: F.114, W.115, E.143, H.146 Ligands: IPA.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.115, A:E.143 IPA.14: 4 residues within 4Å: Chain A: N.111, N.112, L.202 Ligands: IPA.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.202 IPA.15: 1 residues within 4Å: Chain A: G.199 No protein-ligand interaction detected (PLIP) IPA.16: 2 residues within 4Å: Chain A: Y.193, D.200 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.200 Hydrogen bonds: A:D.200 IPA.17: 1 residues within 4Å: Chain A: S.198 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

English, A.C. et al., Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol. Proteins (1999)

Release Date

2000-03-13

Peptides

PROTEIN (THERMOLYSIN): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (THERMOLYSIN)

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