SMTL ID : 8yht.1

hTLR3/minibinder 7.7

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: L.217, A.220, N.221 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain A: N.239 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain A: N.372, E.373 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 8 residues within 4Å: Chain A: E.337, N.387, K.390, V.409, D.411 Chain B: E.15, Y.16, E.19 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: E.7, P.24, N.26 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.26 NAG.6: 3 residues within 4Å: Chain A: V.29, N.31, T.33 No protein-ligand interaction detected (PLIP) NAG.7: 5 residues within 4Å: Chain A: M.74, K.76, T.97, N.98, K.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.76, A:N.98 NAG.8: 3 residues within 4Å: Chain A: K.174, N.226, M.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.226 NAG.9: 3 residues within 4Å: Chain A: R.225, W.247, N.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.221, A:N.249 NAG.10: 4 residues within 4Å: Chain A: G.264, N.265, F.288, H.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H. et al., De novo design of TLR3 binders. To Be Published

Release Date

2025-02-05

Peptides

Toll-like receptor 3: A
minibinder 7.7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Toll-like receptor 3

minibinder 7.7

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