SMTL ID : 9arr.1

Crystal structure of AF9 YEATS domain in complex with dicrotonylated at K1007 and K1014 MOZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-1-mer

Ligands

2 x LI: LITHIUM ION(Non-covalent)

LI.1: 5 residues within 4Å: Chain A: Q.45, V.48, E.49, K.67, Y.71 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:V.48, A:K.67, A:Y.71 LI.8: 5 residues within 4Å: Chain B: Q.45, V.48, E.49, K.67, Y.71 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:V.48, B:E.49, B:K.67, B:Y.71

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 6 residues within 4Å: Chain A: V.19, E.109, G.110, H.111, P.112 Ligands: PEG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.110, A:H.111 NO3.3: 3 residues within 4Å: Chain A: F.35, R.37, K.72 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.37 Water bridges: A:V.36, A:Y.71 NO3.9: 2 residues within 4Å: Chain B: F.105, H.107 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.107 NO3.10: 4 residues within 4Å: Chain B: F.35, R.37, P.70, K.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.37

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 12 residues within 4Å: Chain A: A.17, Q.18, V.19, H.30, L.106, H.107, L.108, H.111, P.112, P.113, V.114 Ligands: NO3.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.19, A:H.30, A:H.107

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: R.61, R.64 Chain C: T.2, X.3, P.4, T.5 Ligands: GOL.6 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.61, C:T.5 Water bridges: A:R.64, A:R.64, A:R.64 GOL.6: 7 residues within 4Å: Chain A: F.28, F.59, P.60, R.64, E.75, S.76 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.64, A:E.75, A:S.76 GOL.7: 6 residues within 4Å: Chain A: S.4, C.5, A.6, N.125, N.126 Chain B: Q.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.5, A:N.126 GOL.11: 6 residues within 4Å: Chain B: E.12, R.37, G.38, P.39, E.40, H.41 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.38, B:E.40, B:H.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becht, D.C. et al., Crystal structure of AF9 YEATS domain in complex with dicrotonylated at K1007 and K1014 MOZ. To Be Published

Release Date

2025-01-22

Peptides

Protein AF-9: AB
Histone acetyltransferase KAT6A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Protein AF-9

Histone acetyltransferase KAT6A

Related Entries With Identical Sequence