SMTL ID : 9d9k.1

Crystal structure of MurC from Pseudomonas aeruginosa in complex with inhibitor M17

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

homo-dimer

Ligands

22 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: T.116, H.117, G.118, K.119, T.120 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: V.220, D.221, D.222, P.223, R.226 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: R.226, T.238, D.244 Chain B: R.91 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: A.245, D.246, R.248, L.264, R.265 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain A: R.158, Y.159, E.296, G.297, I.298 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: R.48, T.150, N.151, A.152, Q.153 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain A: H.208, R.234 Chain B: P.96, E.99, H.173 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: L.135, S.157, R.158, Y.159 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: T.121, H.281, N.282 Ligands: 01.13 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: H.8, L.31, G.32, Y.33 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: N.30, L.31, R.108 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain B: T.116, H.117, G.118, K.119, T.120 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain B: V.220, D.221, D.222, P.223, R.226 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain A: R.91 Chain B: R.226, T.238, D.244 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain B: A.245, D.246, R.248, L.264, R.265 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain B: R.158, Y.159, E.296, G.297, I.298 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain B: R.48, T.150, N.151, A.152, Q.153 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain A: P.96, E.99, H.173 Chain B: H.208, R.234 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain B: L.135, S.157, R.158, Y.159 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain B: T.121, H.281, N.282 Ligands: 01.27 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain B: H.8, L.31, G.32, Y.33 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain B: N.30, L.31, R.108 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 1 residues within 4Å: Chain A: V.94 Ligand excluded by PLIP CL.26: 1 residues within 4Å: Chain B: V.94 Ligand excluded by PLIP

4 x 01: 2-{[(4-amino-5,6-dimethylthieno[2,3-d]pyrimidin-2-yl)methyl]sulfanyl}pyridine-3-carboxylic acid

01.13: 10 residues within 4Å: Chain A: H.117, N.183, D.185, C.219, D.221, D.222, H.281, L.284 Ligands: SO4.9, 01.14 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.183, A:L.284 Hydrogen bonds: A:H.117, A:D.185 Water bridges: A:N.183, A:H.281 Salt bridges: A:H.117 01.14: 6 residues within 4Å: Chain A: D.221, D.222, L.280, H.281, L.284 Ligands: 01.13 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.221, A:L.284 01.27: 10 residues within 4Å: Chain B: H.117, N.183, D.185, C.219, D.221, D.222, H.281, L.284 Ligands: SO4.23, 01.28 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:N.183, B:L.284 Hydrogen bonds: B:H.117, B:D.185 Water bridges: B:N.183, B:H.281 Salt bridges: B:H.117 01.28: 6 residues within 4Å: Chain B: D.221, D.222, L.280, H.281, L.284 Ligands: 01.27 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:D.221, B:L.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal structure of MurC from Pseudomonas aeruginosa in complex with inhibitor M17. To be published

Release Date

2024-09-04

Peptides

UDP-N-acetylmuramate--L-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

UDP-N-acetylmuramate--L-alanine ligase

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