SMTL ID : 9i78.1

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
379 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yang, T.J. et al., SND3 is the membrane insertase within a distinct SEC61 translocon complex. Nat Commun (2025)
Release Date
2025-11-12
Peptides
Translocon Sec61/SecY plug domain-containing protein: A
SEC61 beta subunit: B
SEC61 gamma subunit: C
CCDC47: D
Putative inorganic phosphate transporter protein: E
Translocon-associated protein subunit alpha: F
60S ribosomal protein L2-like protein: G
60S ribosomal protein L3-like protein: H
60S ribosomal protein L4-like protein: I
60S ribosomal protein l5-like protein: J
60S ribosomal protein L6: K
60S ribosomal protein l7-like protein: L
60S ribosomal protein L8: M
60S ribosomal protein l9-like protein: N
60S ribosomal protein L10-like protein: O
Putative ribosomal protein: P
60S ribosomal protein L13: Q
60S ribosomal protein L14-like protein: R
Ribosomal protein L15: S
60S ribosomal protein L16-like protein: T
60S ribosomal protein l17-like protein: U
Ribosomal protein L18-like protein: V
Ribosomal protein L19: W
60S ribosomal protein L20: X
60S ribosomal protein l21-like protein: Y
60S ribosomal protein L22-like protein: Z
60S ribosomal protein l23-like protein: 0
60S ribosomal protein L25-like protein: 1
60S ribosomal protein L26-like protein: 2
60S ribosomal protein L27: 3
60S ribosomal protein L28-like protein: 4
60S ribosomal protein L29: 5
60S ribosomal protein l30-like protein: 6
Putative 60S ribosomal protein: 7
60S ribosomal protein L32-like protein: 8
60S ribosomal protein l33-like protein: 9
Ribosomal protein l34-like protein: a
Dolichyl-diphosphooligosaccharide--protein glycotransferase: b
60S ribosomal protein L36: c
Ribosomal protein L37: d
60S ribosomal protein L38-like protein: e
Ribosomal protein eL39: f
Putative ribosomal protein: g
60S ribosomal protein L41-A: h
60S ribosomal protein L44-like protein: i
60S ribosomal protein L43-like protein: j
Putative 60S ribosomal protein: k
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
1
B
2
C
3
D
4
E
6
F
7
G
LA
H
LB
I
LC
J
LD
K
LE
L
LF
M
LG
N
LH
O
LI
P
LJ
Q
LL
R
LM
S
LN
T
LO
U
LP
V
LQ
W
LR
X
LS
Y
LT
Z
LU
0
LV
1
LX
2
LY
3
LZ
4
La
5
Lb
6
Lc
7
Ld
8
Le
9
Lf
a
Lg
b
Lh
c
Li
d
Lj
e
Lk
f
Ll
g
Lm
h
Ln
i
Lo
j
Lp
k
Lq
Membrane
We predict this structure to be a membrane protein.

Translocon Sec61/SecY plug domain-containing protein

SEC61 beta subunit

SEC61 gamma subunit

CCDC47

Putative inorganic phosphate transporter protein

Translocon-associated protein subunit alpha

60S ribosomal protein L2-like protein

60S ribosomal protein L3-like protein

60S ribosomal protein L4-like protein

60S ribosomal protein l5-like protein

60S ribosomal protein L6

60S ribosomal protein l7-like protein

60S ribosomal protein L8

60S ribosomal protein l9-like protein

60S ribosomal protein L10-like protein

Putative ribosomal protein

60S ribosomal protein L13

60S ribosomal protein L14-like protein

Ribosomal protein L15

60S ribosomal protein L16-like protein

60S ribosomal protein l17-like protein

Ribosomal protein L18-like protein

Ribosomal protein L19

60S ribosomal protein L20

60S ribosomal protein l21-like protein

60S ribosomal protein L22-like protein

60S ribosomal protein l23-like protein

60S ribosomal protein L25-like protein

60S ribosomal protein L26-like protein

60S ribosomal protein L27

60S ribosomal protein L28-like protein

60S ribosomal protein L29

60S ribosomal protein l30-like protein

Putative 60S ribosomal protein

60S ribosomal protein L32-like protein

60S ribosomal protein l33-like protein

Ribosomal protein l34-like protein

Dolichyl-diphosphooligosaccharide--protein glycotransferase

60S ribosomal protein L36

Ribosomal protein L37

60S ribosomal protein L38-like protein

Ribosomal protein eL39

Putative ribosomal protein

60S ribosomal protein L41-A

60S ribosomal protein L44-like protein

60S ribosomal protein L43-like protein

Putative 60S ribosomal protein

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