SMTL ID : 9jui.1

Crystal structure of FFAT motif of Nir2 bound to VAPB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 3 residues within 4Å: Chain A: C.58 Chain B: E.10 Ligands: ZN.2 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.10, A:C.58, H2O.3 ZN.2: 2 residues within 4Å: Chain A: C.58 Ligands: ZN.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.58 ZN.3: 1 residues within 4Å: Chain B: H.9 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, D. et al., Nir2 crystal structures reveal a phosphatidic acid-sensing mechanism at ER-PM contact sites. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-10-15

Peptides

Vesicle-associated membrane protein-associated protein B: A
Nir2 FFAT motif: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vesicle-associated membrane protein-associated protein B

Nir2 FFAT motif