SMTL ID : 9mu9.1

Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Composite map

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain L: C.61, C.64, C.71, H.74 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.61, L:C.64, L:C.71, L:H.74 ZN.2: 4 residues within 4Å: Chain L: C.101, C.104, C.144, C.170 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.101, L:C.104, L:C.144, L:C.170 ZN.3: 4 residues within 4Å: Chain M: C.1109, C.1112, C.1127, C.1130 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.1109, M:C.1112, M:C.1127, M:C.1130 ZN.4: 4 residues within 4Å: Chain N: C.87, C.89, C.93, C.96 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.87, N:C.89, N:C.93, N:C.96 ZN.5: 4 residues within 4Å: Chain Q: C.8, C.11, C.30, C.33 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:C.8, Q:C.11, Q:C.30, Q:C.33 ZN.6: 4 residues within 4Å: Chain Q: C.77, C.80, C.105, C.110 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:C.77, Q:C.80, Q:C.105, Q:C.110 ZN.7: 4 residues within 4Å: Chain R: C.7, C.10, C.44, C.45 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.7, R:C.10, R:C.44, R:C.45 ZN.8: 4 residues within 4Å: Chain T: C.7, C.10, C.24, C.27 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:C.7, T:C.10, T:C.24, T:C.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venette-Smith, N.L. et al., Structural Characterization of Native RNA Polymerase II Transcription Complexes in Drosophila melanogaster. To Be Published

Release Date

2025-02-19

Peptides

Histone H2A: DE
Histone H2B: FG
Histone H3: HI
Histone H4: JK
DNA-directed RNA polymerase II subunit RPB1: L
DNA-directed RNA polymerase II subunit RPB2: M
DNA-directed RNA polymerase II subunit RPB3: N
DNA-directed RNA polymerases I, II, and III subunit RPABC2: O
DNA-directed RNA polymerases I, II, and III subunit RPABC3: P
DNA-directed RNA polymerase II subunit RPB9: Q
DNA-directed RNA polymerases I, II, and III subunit RPABC5: R
DNA-directed RNA polymerase II subunit RPB11: S
DNA-directed RNA polymerase II subunit RPB12: T
DNA-directed RNA polymerase II subunit RPB5: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
g

E
c

F
h

G
d

H
e

I
a

J
f

K
b

L
A

M
B

N
C

O
F

P
H

Q
I

R
J

S
K

T
L

U
E

Histone H2A

Histone H2B

Histone H3

Histone H4

DNA-directed RNA polymerase II subunit RPB1

DNA-directed RNA polymerase II subunit RPB2

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerase II subunit RPB12

DNA-directed RNA polymerase II subunit RPB5

Related Entries With Identical Sequence