Appendix B: A few useful URLs

Structure and Model Databases

• PDB [ RCSB-PDB ]   [ PDBe ]   [ PDBj ]   The world-wide PDB is the single archive of experimental macromolecular structural data.
  
• Protein Model Portal The Protein Model Portal (PMP) provides a single portal to query millions of comparative protein models at various model databases simultaneously, as well as links to interactive services for comparative modelling, fold recognition, and quality assessment.
  
• PQS Protein Quaternary Structure Server
• EDS Electron Density Server at Uppsala University
• SCOP Structural Classification of Proteins.
• CATH Protein Structure Classification
  

Protein Structure Visualization Tools

• DeepView The Swiss-PdbViewer
• DINO Protein Structure Visualization for Linux
• Molscript a program for rendering high quality images of molecular 3D structures such as proteins.
• Molscript a program for displaying molecular 3D structures such as proteins.
• POV-RAY Open Source Raytracing software

Last modification: Please note that these pages have not been updated since 1999 and are provided on a "as is basis". We are currently working on an updated version of this course.