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Non-structural protein 10 (nsp10) | P0DTD1 PRO_0000449628
Created: May 5, 2023 at 21:33
Model 01
- Ligands
24 x ZN 24 x ZINC IONZN.1: 4 residues within 4Å:- Chain A: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.74, A:C.77, A:H.83, A:C.90
ZN.2: 4 residues within 4Å:- Chain A: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:C.117, A:C.120, A:C.128
ZN.3: 4 residues within 4Å:- Chain B: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.74, B:C.77, B:H.83, B:C.90
ZN.4: 4 residues within 4Å:- Chain B: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:C.117, B:C.120, B:C.128
ZN.5: 4 residues within 4Å:- Chain C: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:C.74, C:C.77, C:H.83, C:C.90
ZN.6: 4 residues within 4Å:- Chain C: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:C.117, C:C.120, C:C.128
ZN.7: 4 residues within 4Å:- Chain D: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.74, D:C.77, D:H.83, D:C.90
ZN.8: 4 residues within 4Å:- Chain D: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:C.117, D:C.120, D:C.128
ZN.9: 4 residues within 4Å:- Chain E: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:C.74, E:C.77, E:H.83, E:C.90
ZN.10: 4 residues within 4Å:- Chain E: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:C.117, E:C.120, E:C.128
ZN.11: 4 residues within 4Å:- Chain F: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:C.74, F:C.77, F:H.83, F:C.90
ZN.12: 4 residues within 4Å:- Chain F: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:C.117, F:C.120, F:C.128
ZN.13: 4 residues within 4Å:- Chain G: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:C.74, G:C.77, G:H.83, G:C.90
ZN.14: 4 residues within 4Å:- Chain G: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:C.117, G:C.120, G:C.128
ZN.15: 3 residues within 4Å:- Chain H: C.74, C.77, C.90
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:C.74, H:C.77, H:C.90
ZN.16: 4 residues within 4Å:- Chain H: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:C.117, H:C.120, H:C.128
ZN.17: 4 residues within 4Å:- Chain I: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:C.74, I:C.77, I:H.83, I:C.90
ZN.18: 4 residues within 4Å:- Chain I: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain I- Metal complexes: I:C.117, I:C.120, I:C.128
ZN.19: 4 residues within 4Å:- Chain J: C.74, C.77, H.83, C.90
3 PLIP interactions:3 interactions with chain J- Metal complexes: J:C.74, J:C.77, J:C.90
ZN.20: 3 residues within 4Å:- Chain J: C.117, C.120, C.128
3 PLIP interactions:3 interactions with chain J- Metal complexes: J:C.117, J:C.120, J:C.128
ZN.21: 4 residues within 4Å:- Chain K: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:C.74, K:C.77, K:H.83, K:C.90
ZN.22: 4 residues within 4Å:- Chain K: C.117, C.120, C.128, S.129
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:C.117, K:C.120, K:C.128
ZN.23: 4 residues within 4Å:- Chain L: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:C.74, L:C.77, L:H.83, L:C.90
ZN.24: 3 residues within 4Å:- Chain L: C.117, C.120, C.128
3 PLIP interactions:3 interactions with chain L- Metal complexes: L:C.117, L:C.120, L:C.128
QMEANDisCo Local
QMEAN Z-Scores
Template
2g9t.1.A
orf1a polyprotein
Crystal structure of the SARS coronavirus nsp10 at 2.1A
Crystal structure of the SARS coronavirus nsp10 at 2.1A
- Seq Identity
- 97.12%
- Coverage
| Biounit Oligo State | Homo-12-mer |
| QSQE | 0.50 |
| Method | X-ray, 2.10 Å |
| Seq Similarity | 0.63 |
| Coverage | 1.00 |
| Range | 9-129 |
Model-Template Alignment
Model 02
- Ligands
2 x ZN 2 x ZINC IONZN.6: 4 residues within 4Å:- Chain B: C.74, C.77, H.83, C.90
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.74, B:C.77, B:H.83, B:C.90
ZN.7: 4 residues within 4Å:- Chain B: C.117, C.120, C.128, C.130
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.117, B:C.120, B:C.128, B:C.130
QMEANDisCo Local
QMEAN Z-Scores
Template
6w4h.1.B
Non-structural protein 10
1.80 Angstrom Resolution Crystal Structure of NSP16 - NSP10 Complex from SARS-CoV-2
1.80 Angstrom Resolution Crystal Structure of NSP16 - NSP10 Complex from SARS-CoV-2
- Seq Identity
- 100.00%
- Coverage
| Biounit Oligo State | Hetero-dimer |
| QSQE | 0.00 |
| Method | X-ray, 1.80 Å |
| Seq Similarity | 0.64 |
| Coverage | 1.00 |
| Range | 18-133 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✓ | ZINC ION | |
| ✓ | ZINC ION | |
| ✕ - Not biologically relevant. | ACETATE ION | |
| ✕ - Not biologically relevant. | ACETATE ION | |
| ✕ - Binding site not conserved. | beta-D-fructopyranose | |
| ✕ - Binding site not conserved. | beta-D-fructopyranose | |
| ✕ - Binding site not conserved. | S-ADENOSYLMETHIONINE | |
| ✕ - Not in contact with model. | SULFITE ION |
Model-Template Alignment
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