UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9A268 (AHPD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Alkyl hydroperoxide reductase AhpD; Alkylhydroperoxidase AhpD; | |
Q9A3Q9 (APTA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Omega-aminotransferase; Beta-alanine--pyruvate aminotransferase; | |
Q9AAL3 (ARGD1_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Acetylornithine aminotransferase 1; | |
Q9A683 (ARLY_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Argininosuccinate lyase; Arginosuccinase; | |
Q9A2H2 (AROA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; | |
Q9A435 (AROK_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Shikimate kinase; | |
Q9A7W1 (ASTB2_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | N-succinylarginine dihydrolase 2; | |
Q9AAL5 (ASTD1_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | N-succinylglutamate 5-semialdehyde dehydrogenase 1; Succinylglutamic semialdehyde dehydrogenase 1; | |
Q9A2V6 (ATPD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | ATP synthase subunit delta; ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; | |
Q9A7Z1 (BIOF_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Putative 8-amino-7-oxononanoate synthase; 7-keto-8-amino-pelargonic acid synthase; 8-amino-7-ketopelargonate synthase; | |
Q9A298 (CCMA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Cytochrome c biogenesis ATP-binding export protein CcmA; Heme exporter protein A; | |
O87719 (CHED_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Probable chemoreceptor glutamine deamidase CheD; | |
P0CAU1 (CLPP_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | ATP-dependent Clp protease proteolytic subunit; Endopeptidase Clp; | |
Q9A9Q6 (PDXH_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Pyridoxine/pyridoxamine 5'-phosphate oxidase; PNP/PMP oxidase; Pyridoxal 5'-phosphate synthase; | |
Q9A5I5 (PLED_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Response regulator PleD; Stalked cell differentiation-controlling protein; Diguanylate cyclase; DGC; 2.7.7.65; Diguanylate kinase; | |
Q9A5F3 (PURQ_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Phosphoribosylformylglycinamidine synthase subunit PurQ; Formylglycinamide ribonucleotide amidotransferase subunit I; Glutaminase PurQ; Phosphoribosylformylglycinamidine synthase subunit I; | |
Q9A810 (PYRE_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Orotate phosphoribosyltransferase; | |
Q9ABW5 (PYRF_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Orotidine 5'-phosphate decarboxylase; OMP decarboxylase; | |
Q9A3P3 (QUEE_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | 7-carboxy-7-deazaguanine synthase; Queuosine biosynthesis protein QueE; | |
Q9ABF8 (RECR_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Recombination protein RecR; | |
Q9A2B4 (RIMM_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Ribosome maturation factor RimM; | |
Q9AC22 (RIMP_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Ribosome maturation factor RimP; | |
P58100 (COAE_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Dephospho-CoA kinase; Dephosphocoenzyme A kinase; | |
P0CAW8 (CTRA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Cell cycle transcriptional regulator CtrA; Response regulator SokA; | |
Q9AAH2 (DCTA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | C4-dicarboxylate transport protein; | |
Q9AA85 (EFP_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Elongation factor P; | |
Q9A7J9 (ENO_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Enolase; 2-phospho-D-glycerate hydro-lyase; 2-phosphoglycerate dehydratase; | |
P17899 (FLBD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Transcriptional regulatory protein FlbD; | |
Q04953 (FLBE_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Protein FlbE; | |
P0CAT8 (FLII_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Flagellum-specific ATP synthase; | |
Q9A6I5 (FUMC_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Fumarate hydratase class II; Aerobic fumarase; Iron-independent fumarase; | |
Q9A353 (GCSPA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Probable glycine dehydrogenase (decarboxylating) subunit 1; Glycine cleavage system P-protein subunit 1; Glycine decarboxylase subunit 1; Glycine dehydrogenase (aminomethyl-transferring) subunit 1; | |
Q9ABV3 (GLMM_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Phosphoglucosamine mutase; | |
Q9A5Z3 (GLMU_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Bifunctional protein GlmU; UDP-N-acetylglucosamine pyrophosphorylase; 2.7.7.23; N-acetylglucosamine-1-phosphate uridyltransferase; Glucosamine-1-phosphate N-acetyltransferase; 2.3.1.157; | |
Q9A8J6 (GLYA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Serine hydroxymethyltransferase; | |
Q9A231 (HIS5_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Imidazole glycerol phosphate synthase subunit HisH; IGP synthase glutaminase subunit; IGP synthase subunit HisH; ImGP synthase subunit HisH; | |
Q9A232 (HIS7_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Imidazoleglycerol-phosphate dehydratase; | |
Q9A238 (HSLU_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | ATP-dependent protease ATPase subunit HslU; Unfoldase HslU; | |
Q9A239 (HSLV_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | ATP-dependent protease subunit HslV; | |
P58079 (HUTI_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Imidazolonepropionase; Imidazolone-5-propionate hydrolase; | |
Q9A3J2 (IMUB_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Protein ImuB; | |
Q9AC20 (IPYR_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Inorganic pyrophosphatase; Pyrophosphate phospho-hydrolase; | |
Q9A7I5 (ISPDF_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Bifunctional enzyme IspD/IspF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2.7.7.60; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; MECDP-synthase; MECPP-synthase; MECPS; 4.6.1.12; | |
Q9ABS4 (IXTPA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | dITP/XTP pyrophosphatase; Non-canonical purine NTP pyrophosphatase; Non-standard purine NTP pyrophosphatase; Nucleoside-triphosphate diphosphatase; Nucleoside-triphosphate pyrophosphatase; | |
Q9A8T2 (KAD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Adenylate kinase; ATP-AMP transphosphorylase; ATP:AMP phosphotransferase; Adenylate monophosphate kinase; | |
Q9A7X6 (KDPC_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Potassium-transporting ATPase KdpC subunit; ATP phosphohydrolase [potassium-transporting] C chain; Potassium-binding and translocating subunit C; Potassium-translocating ATPase C chain; | |
Q9ABN1 (LEUD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | 3-isopropylmalate dehydratase small subunit; Alpha-IPM isomerase; Isopropylmalate isomerase; | |
Q9A724 (LEXA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | LexA repressor; | |
Q9A943 (LLDD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | L-lactate dehydrogenase; | |
Q9AAR4 (MAND2_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | D-mannonate dehydratase CC0532; |
Caulobacter vibrioides is a Gram-negative, oligotrophic bacterium widely distributed in freshwater lakes and streams. Caulobacter daughter cells have two very different forms. One daughter is a mobile "swarmer" cell that has a single flagellum at one cell pole that provides swimming motility for chemotaxis. The other daughter, called the "stalked" cell has a tubular stalk structure protruding from one pole that has an adhesive holdfast material on its end, with which the stalked cell can adhere to surfaces. Swarmer cells differentiate into stalked cells after a short period of motility. Chromosome replication and cell division only occurs in the stalked cell stage. Its name derives from its crescent shape caused by the protein Crescentin.
C. vibrioides is an important model organism for studying the regulation of the cell cycle, asymmetric cell division, and cellular differentiation. Its use as a model originated with developmental biologist Lucy Shapiro.
From left to right: i) The number of proteins in the reference proteome of Caulobacter vibrioides, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caulobacter vibrioides for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caulobacter vibrioides, please visit UniProtKB.
You can easily download the latest protein sequences for Caulobacter vibrioides proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
3,720 | 2,949 | 4,973 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caulobacter vibrioides reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caulobacter vibrioides proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 15-mer | 16-mer | 20-mer | 24-mer | 25-mer | 26-mer | 34-mer | 40-mer | 42-mer | 55-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2,885 | 1,484 | 114 | 277 | 12 | 97 | 6 | 36 | 2 | 12 | 1 | 14 | 3 | 1 | 1 | 7 | 9 | 1 | 2 | 1 | 1 | 6 | 1 |