UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q22347 (ACADM_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; | |
Q21005 (ACC1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine-gated chloride channel subunit acc-1; | |
Q18812 (ACC2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine-gated chloride channel subunit acc-2; | |
Q9U358 (ACC4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine-gated ion channel acc-4; | |
Q9U298 (ACH8_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Neuronal acetylcholine receptor subunit eat-2; Abnormal pharyngeal pumping eat-2; | |
Q9XX11 (ACKMT_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ATP synthase subunit C lysine N-methyltransferase; | |
Q8T8B9 (ACMSD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Picolinate carboxylase; | |
Q23534 (ACP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative acid phosphatase 1; | |
Q07750 (ADF1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Actin-depolymerizing factor 1, isoforms a/b; Uncoordinated protein 60; | |
Q94177 (ADRL_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Progestin and adipoQ receptor-like protein 1; | |
P91408 (AGT2L_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Ethanolamine-phosphate phospho-lyase homolog 1; Alanine--glyoxylate aminotransferase 2-like; | |
O02219 (AHA1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Aryl hydrocarbon receptor nuclear translocator homolog; AHR-associated protein; | |
P53993 (ALG11_CAEEL) | Swiss-Prot | Caenorhabditis elegans | GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase; Asparagine-linked glycosylation protein 11 homolog; | |
Q22004 (AMERL_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein R166.3; | |
P35603 (AP2M_CAEEL) | Swiss-Prot | Caenorhabditis elegans | AP-2 complex subunit mu; Clathrin assembly protein complex 2 mu medium chain; Clathrin coat assembly protein AP50; Clathrin coat-associated protein AP50; Mu2-adaptin; Plasma membrane adaptor AP-2 50 kDa protein; Protein dumpy-23; | |
P91455 (APT_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Adenine phosphoribosyltransferase; | |
Q94231 (ARF11_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ADP-ribosylation factor 1-like 1; ADP-ribosylation factor-like protein 6; ADP-ribosylation factor-related protein 1.1; | |
Q10943 (ARF12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ADP-ribosylation factor 1-like 2; ADP-ribosylation factor-related protein 1.2; | |
Q20758 (ARL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ADP-ribosylation factor-like protein 1; | |
Q19705 (ARL2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ADP-ribosylation factor-like protein 2; Abnormal eversion of vulva protein 20; | |
O45379 (ARL3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ADP-ribosylation factor-like protein 3; | |
P34212 (ARL5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ADP-ribosylation factor-like protein 5; | |
Q18510 (ARL6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ADP-ribosylation factor-like protein 6; | |
Q9XWV3 (ARPC3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable actin-related protein 2/3 complex subunit 3; Arp2/3 complex 21 kDa subunit; | |
P51485 (ARRB_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Beta-arrestin arr-1; | |
G5EFF1 (ASD2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | RNA-binding protein asd-2; Alternative splicing defective protein 2; | |
Q21966 (ASP4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Aspartic protease 4; | |
P34379 (ATG13_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Autophagy-related protein 13 homolog; | |
P24888 (ATP6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ATP synthase subunit a; F-ATPase protein 6; | |
Q93703 (ATTY_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tyrosine aminotransferase; L-tyrosine:2-oxoglutarate aminotransferase; | |
Q9XV51 (BAT45_CAEEL) | Swiss-Prot | Caenorhabditis elegans | BTB and MATH domain-containing protein 45; | |
Q5CZ52 (BBS4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bardet-Biedl syndrome 4 protein homolog; | |
Q17528 (BEST1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bestrophin homolog 1; | |
P34319 (BEST5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bestrophin homolog 5; | |
Q94175 (BEST9_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bestrophin homolog 9; | |
O62247 (BLI5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Kunitz-type protein bli-5; Blistered cuticle protein 5; Kunitz-type protease inhibitor bli-5; | |
Q03562 (BRE3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Beta-1,4-mannosyltransferase bre-3; Bacillus thuringiensis toxin-resistant protein 3; | |
O45363 (BST12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bestrophin homolog 12; | |
P34577 (BST18_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bestrophin homolog 18; | |
P30640 (BUD13_CAEEL) | Swiss-Prot | Caenorhabditis elegans | BUD13 homolog; | |
Q20932 (BYN1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein byn-1; | |
P46505 (BZIP8_CAEEL) | Swiss-Prot | Caenorhabditis elegans | bZIP transcription factor 8; | |
Q10946 (C19L2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | CWF19-like protein 2 homolog; | |
P41956 (C560_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial; | |
Q09296 (CBPC6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cytosolic carboxypeptidase 6; ATP/GTP-binding protein-like 4 homolog; | |
O17754 (CBPE_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Carboxypeptidase E; Egg-laying defective protein 21; | |
G5EET5 (CBXH1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Chromobox protein homolog hpl-1; HP1-like heterochromatin protein 1; | |
G5EDE2 (CBXH2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Chromobox protein homolog hpl-2; HP1-like heterochromatin protein 2; | |
Q9U2M5 (CCND_CAEEL) | Swiss-Prot | Caenorhabditis elegans | G1/S-specific cyclin-D; | |
P34425 (CCNT1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cyclin-T1.1; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,832 | 12,782 | 23,005 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 12-mer | 14-mer | 16-mer | 20-mer | 24-mer | 26-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20,250 | 1,849 | 161 | 377 | 106 | 101 | 8 | 37 | 8 | 13 | 38 | 6 | 8 | 4 | 10 | 1 | 6 | 1 | 10 | 3 | 2 | 1 | 2 | 2 | 1 |