P0DTC1 (R1A_SARS2) Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

4405 aa; Sequence (Fasta) ; 2 identical sequences: Severe acute respiratory syndrome coronavirus 2: A0A6G7KRG6, A0A6G6A224

Available Structures

Host translation inhibitor nsp1 1-180; PRO_0000449635

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7k7p.1.Amonomer0.7610-126
100.00
6zoj.1.8monomer0.67148-180
100.00

Non-structural protein 2 181-818; PRO_0000449636

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7msw.1.Amonomer0.84184-818
ZN;100.00

Papain-like protease nsp3 819-2763; PRO_0000449637

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an… Heteromer
P62987;
1565-1878
100ZN;BR;
Crystal structure of the SARS-CoV-2 papain-like protease (PLPro) C112S mutanthomo-2-mer1563-1878
99.68ZN;PO4;
Structure of SARS-CoV-2 Papain-like protease PLpro in complex with 3, 4-Dihydroxybenzoic acid, meth…homo-2-mer1564-1878
100HE9;GOL;ZN;PO4;CL;
Structure of SARS-CoV-2 NSP3 macrodomain in the apo formhomo-2-mer1024-1192
100CL;MPO;
SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 7monomer1563-1879
99.37A1ARL;ZN;
SARS-CoV-2 Papain-like Protease (PLpro) with Fragment 10monomer1562-1877
99.68A1ASL;ZN;SO4;
SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-89monomer1564-1878
100ZN;SO4;XT7;GOL;
SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-83monomer1564-1878
100ZN;SO4;BO3;Y54;
SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-24monomer1564-1878
100XR8;ZN;SO4;BO3;
SARS-CoV-2 papain-like protease (PLpro) bound to PF-07957472monomer1566-1878
99.68A1AZ1;TFA;ZN;
SARS CoV-2 PLpro in complex with inhibitor 3kmonomer1566-1875
99.67S88;ZN;DMS;
TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6ywk.3.Amonomer0.841025-1194
100.00
6w9c.1.Amonomer0.801566-1878
ZN;100.00
3e9s.1.Amonomer0.791564-1877
TTT;ZN;82.86
7cmd.4.Amonomer0.791564-1878
TTT;ZN;100.00
2w2g.1.Amonomer0.791231-1494
75.00
6wuu.2.Amonomer0.791562-1879
ACE;ZN;99.69
2kqv.1.Amonomer0.751369-1493
78.13
2kqw.1.Amonomer0.711496-1550
80.22
2k87.1.Amonomer0.691907-2021
81.74

Non-structural protein 4 2764-3263; PRO_0000449638

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
3vcb.1.Ahomo-2-mer0.723174-3262
61.36

3C-like proteinase nsp5 3264-3569; PRO_0000449639

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
CRYSTAL STRUCTURE OF THE SARS-COV-2 MAIN PROTEASE COMPLEXED WITH FRAGMENT F01homo-2-mer3264-3569
100NA;DMS;5P9;
Crystal structure of SARS-CoV-2 Mpro in complex with cyclic peptide GM4 including unnatural amino a…homo-2-mer3264-3569
100PEG;DMS;EDO;PGE;
Structure of SARS-CoV-2 Mpro in complex with its degraderhomo-2-mer3264-3569
100A1LYZ;
Crystal structure of SARS-CoV-2 Main Protease (Mpro) with covalent inhibitor 5,8-Dihydroxy-1,4-naph…homo-2-mer3264-3569
100.0PEG;X7F;DMS;
Crystal structure of SARS-CoV-2 Mpro-Q189K mutant in complex with nirmatrelvirhomo-2-mer3264-3568
99.674WI;
Crystal structure of SARS-CoV-2 Mpro-E166V mutant, free enzymehomo-2-mer3264-3568
99.67
The co-crystal structure of SARS-CoV-2 Mpro in complex with compound H109homo-2-mer3264-3567
100A1D9H;
SARS-COV2 Main Protease in complex with inhibitor MG-131homo-2-mer3264-3567
100I8H;NA;
SARS-CoV-2 Mpro in Complex with RK-107homo-2-mer3264-3567
100A1IMU;
Crystal structure of SARS-CoV-2 Mpro-Q189K mutant in complex with 13b-Khomo-2-mer3264-3566
99.67O6K;
Crystal structure of the SARS-CoV-2 main protease in complex with SY110homo-2-mer3264-3566
99.67LVX;
Crystal structure of SARS-CoV-2 Mpro-H172Y mutant, free enzymehomo-2-mer3264-3565
99.01CL;
Crystal structure of SARS-CoV-2 Mpro-H172Y mutant in complex with 13b-Khomo-2-mer3264-3565
99.67O6K;CL;
Crystal structure of SARS-CoV-2 Mpro-E166V mutant in complex with 13b-Khomo-2-mer3264-3565
99.67UAX;
Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the covalently bound inhibitor…homo-2-mer3264-3564
100A1IF1;BR;
SARS-COV2 Main Protease in complex with inhibitor MG78homo-2-mer3264-3564
100I70;CL;NA;
Crystal structure of the SARS-CoV-2 main protease in complex with Hit-1homo-2-mer3264-3564
100.0LV0;DMS;
Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the covalently bound inhibitor…homo-2-mer3264-3563
100.0A1IEY;MG;BR;
Crystal structure of SARS-Cov-2 main protease, pH=6.5homo-2-mer3266-3564
100
Crystal structure of SARS-Cov-2 main protease in complex with S217622homo-2-mer3266-3563
1007YY;
Crystal structure of SARS-Cov-2 main protease D48N mutant in complex with PF07321332homo-2-mer3266-3563
99.664WI;
Crystal structure of SARS-Cov-2 main protease, pH=6.0homo-2-mer3266-3563
100.0
Crystal structure of SARS-Cov-2 main protease, pH=8.5homo-2-mer3266-3561
100.0
Crystal structure of SARS-Cov-2 main protease D48N mutanthomo-2-mer3267-3561
99.66
Crystal structure of SARS-CoV-2 Mpro-Q189K mutant, free enzymemonomer3264-3564
99.67
TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
5rfv.1.Bhomo-2-mer0.913264-3567
T8J;100.00
5r7z.1.Bhomo-2-mer0.913264-3567
HWH;100.00
2z9j.1.Ahomo-2-mer0.893264-3567
DTZ;96.08
6lu7.1.Bhomo-2-mer0.893264-3569
100.00
6y2g.1.Ahomo-2-mer0.883264-3566
GLY;O6K;100.00
2a5i.1.Bhomo-2-mer0.873264-3569
AZP;96.08

Non-structural protein 7 3860-3942; PRO_0000449641

DescriptionPDB IDOligo-stateRangeSeq id (%)Ligands
SARS-CoV-2 E-RTC complex with RNA-nsp9 Heteromer
P0DTD1;
3861-3932
100ZN;MN;
Coupling of N7-methyltransferase and 3'-5' exoribonuclease with SARS-CoV-2 polymerase reveals mecha… Heteromer
P0DTD1;
3861-3932
10013×ZN;MG;
TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
6m71.1.Bmonomer0.803861-3930
100.00
7jlt.1.Amonomer0.793860-3938
100.00
2ahm.1.Bmonomer0.753860-3933
98.80

Non-structural protein 8 3943-4140; PRO_0000449642

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
2ahm.1.Hmonomer0.773944-4134
97.47
7jlt.1.Dmonomer0.764019-4135
100.00
6nur.1.Bmonomer0.764019-4133
97.47
2ahm.1.Emonomer0.703980-4134
97.47
6m71.1.Dmonomer0.704020-4133
100.00

RNA-capping enzyme subunit nsp9 4141-4253; PRO_0000449643

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
1qz8.1.Ahomo-2-mer0.794143-4253
97.35
6w4b.1.Ahomo-2-mer0.794141-4253
100.00
1uw7.1.Bhomo-2-mer0.734141-4253
97.35

Non-structural protein 10 4254-4392; PRO_0000449644

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
2g9t.1.Ahomo-12-mer0.804261-4382
24×ZN;97.12
6w4h.1.Bmonomer0.774271-4386
ZN;100.00