SMTL ID : 2ph8.1

Crystal Structure of Human Beta Secretase Complexed with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.255, Q.346, S.347, S.348, T.349 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.348, A:S.348, A:T.349 Water bridges: A:R.255 Salt bridges: A:R.255 SO4.2: 6 residues within 4Å: Chain A: R.116, A.117, N.118, E.154, S.159, Q.163 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.116, A:N.118, A:S.159 Water bridges: A:N.118, A:Q.163

1 x 35A: N-[(5R,14R)-5-AMINO-5,14-DIMETHYL-4-OXO-3-OXA-18-AZATRICYCLO[15.3.1.1~7,11~]DOCOSA-1(21),7(22),8,10,17,19-HEXAEN-19-YL]-N-METHYLMETHANESULFONAMIDE(Non-covalent)

35A.3: 19 residues within 4Å: Chain A: S.30, G.31, G.33, L.50, D.52, G.54, Y.91, T.92, Q.93, F.128, I.130, W.135, D.248, G.250, T.251, T.252, N.253, R.255, S.345 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.50, A:Y.91, A:Q.93, A:F.128, A:F.128, A:I.130, A:W.135 Hydrogen bonds: A:D.52, A:T.92, A:T.92, A:Q.93, A:T.252, A:N.253, A:S.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moore, K.P. et al., Strategies toward improving the brain penetration of macrocyclic tertiary carbinamine BACE-1 inhibitors. Bioorg.Med.Chem.Lett. (2007)

Release Date

2008-04-22

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

Related Entries With Identical Sequence