SMTL ID : 3exo.1

Crystal structure of BACE1 bound to inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.255, S.347, S.348, T.349 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.348, A:T.349 Salt bridges: A:R.255 SO4.2: 5 residues within 4Å: Chain A: T.102, R.116, A.117, N.118, Q.163 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.116, A:N.118, A:N.118, A:Q.163 SO4.3: 4 residues within 4Å: Chain A: P.64, Y.71, Q.73, Q.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.71, A:Q.73, A:Q.75

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: Y.88, P.90, R.148 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.88, A:Y.88

1 x 5MS: N-{2-methyl-5-[(6-phenylpyrimidin-4-yl)amino]phenyl}methanesulfonamide(Non-covalent)

5MS.5: 15 residues within 4Å: Chain A: G.31, Q.32, G.33, L.50, D.52, Y.91, Q.93, K.127, F.128, F.129, I.130, W.135, I.138, G.250, T.252 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.50, A:Y.91, A:K.127, A:F.128, A:F.128, A:I.130, A:W.135, A:I.138 Hydrogen bonds: A:F.128, A:G.250 Water bridges: A:G.33, A:G.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steele, T.G. et al., Identification of a small molecule beta-secretase inhibitor that binds without catalytic aspartate engagement. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-02-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1