SMTL ID : 4b0q.1

Lead Generation of BACE1 Inhibitors by Coupling Non-amidine New Warheads to a Known Binding Scaffold

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x GMF: 2-[[3-(3-METHOXYPHENYL)PHENYL]-(4-PYRIDYL)METHYL]GUANIDINE(Non-covalent)

GMF.1: 19 residues within 4Å: Chain A: S.10, G.11, Q.12, G.13, L.30, D.32, G.34, S.35, Y.71, W.76, F.108, I.110, W.115, I.118, D.228, S.229, G.230, T.231, T.232 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.108, A:F.108, A:I.110, A:W.115, A:I.118 Hydrogen bonds: A:T.231, A:T.231 Water bridges: A:Y.14, A:G.34, A:D.228 Salt bridges: A:D.32, A:D.228

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: A.43, P.44, H.45, L.48, I.102, T.103, S.105, F.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.105 Water bridges: A:S.105 Salt bridges: A:H.45 ACT.3: 4 residues within 4Å: Chain A: Q.73, G.230, T.231, T.232 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.232, A:T.232, A:T.232 Water bridges: A:N.233 ACT.4: 2 residues within 4Å: Chain A: L.188, W.189 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pendrill, R. et al., Lead Generation of Bace1 Inhibitors by Coupling Non-Amidine New Warheads to a Known Binding Scaffold. To be Published

Release Date

2013-07-24

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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