SMTL ID : 6pev.1

CryoEM Plasmodium falciparum M18 aspartyl aminopeptidase

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.86, A:D.324, A:D.324, A:D.434 ZN.2: 6 residues within 4Å: Chain A: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.324, A:D.324, A:D.434, A:D.434 ZN.3: 7 residues within 4Å: Chain B: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.86, B:D.324, B:D.324, B:D.434 ZN.4: 6 residues within 4Å: Chain B: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.324, B:D.324, B:D.434, B:D.434 ZN.5: 7 residues within 4Å: Chain C: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.86, C:D.324, C:D.324, C:D.434 ZN.6: 6 residues within 4Å: Chain C: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.324, C:D.324, C:D.434, C:D.434 ZN.7: 7 residues within 4Å: Chain D: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.8 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.86, D:D.324, D:D.324, D:D.434 ZN.8: 6 residues within 4Å: Chain D: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.324, D:D.324, D:D.434, D:D.434 ZN.9: 7 residues within 4Å: Chain E: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.10 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.86, E:D.324, E:D.324, E:D.434 ZN.10: 6 residues within 4Å: Chain E: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.9 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.324, E:D.324, E:D.434, E:D.434 ZN.11: 7 residues within 4Å: Chain F: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.12 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.86, F:D.324, F:D.324, F:D.434 ZN.12: 6 residues within 4Å: Chain F: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.11 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.324, F:D.324, F:D.434, F:D.434 ZN.13: 7 residues within 4Å: Chain G: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.14 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.86, G:D.324, G:D.324, G:D.434 ZN.14: 6 residues within 4Å: Chain G: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.13 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.324, G:D.324, G:D.434, G:D.434 ZN.15: 7 residues within 4Å: Chain H: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.16 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.86, H:D.324, H:D.324, H:D.434 ZN.16: 6 residues within 4Å: Chain H: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.15 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.324, H:D.324, H:D.434, H:D.434 ZN.17: 7 residues within 4Å: Chain I: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.18 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.86, I:D.324, I:D.324, I:D.434 ZN.18: 6 residues within 4Å: Chain I: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.17 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.324, I:D.324, I:D.434, I:D.434 ZN.19: 7 residues within 4Å: Chain J: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.20 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.86, J:D.324, J:D.324, J:D.434 ZN.20: 6 residues within 4Å: Chain J: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.19 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.324, J:D.324, J:D.434, J:D.434 ZN.21: 7 residues within 4Å: Chain K: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.22 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.86, K:D.324, K:D.324, K:D.434 ZN.22: 6 residues within 4Å: Chain K: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.21 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:D.324, K:D.324, K:D.434, K:D.434 ZN.23: 7 residues within 4Å: Chain L: H.86, D.324, N.325, E.379, E.380, D.434 Ligands: ZN.24 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.86, L:D.324, L:D.324, L:D.434 ZN.24: 6 residues within 4Å: Chain L: H.86, D.324, E.379, D.434, M.533 Ligands: ZN.23 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:D.324, L:D.324, L:D.434, L:D.434

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ho, C.M. et al., Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu. Nat.Methods (2020)

Release Date

2019-12-11

Peptides

M18 aspartyl aminopeptidase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M18 aspartyl aminopeptidase