SMTL ID : 7h00.1

Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011221-001

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x 01: (4M)-4-(4-{[(1S)-1-(2,3-dihydro[1,4]dioxino[2,3-b]pyridin-6-yl)-2,2-dimethylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1-methyl-1H-pyrazole-5-carbonitrile

01.1: 13 residues within 4Å: Chain A: A.21, D.22, I.23, A.38, G.48, V.49, A.52, L.126, A.129, G.130, F.132, A.154, F.156 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.49, A:V.49, A:A.52, A:A.129, A:F.156, A:F.156 Hydrogen bonds: A:D.22, A:I.23, A:F.156 Water bridges: A:G.48, A:V.49, A:V.49, A:V.49, A:S.128, A:I.131, A:I.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aschenbrenner, J.C. et al., Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre. To Be Published

Release Date

2024-05-15

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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