- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 4 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)(Non-covalent)
BEF.2: 7 residues within 4Å:- Chain A: D.63, E.64, N.65, T.91, K.92, K.113
- Ligands: MG.1
No protein-ligand interaction detected (PLIP)BEF.11: 9 residues within 4Å:- Chain A: D.244, A.276, T.277, Q.278, D.366, H.421, H.505
- Ligands: ZN.3, ZN.4
No protein-ligand interaction detected (PLIP)BEF.15: 9 residues within 4Å:- Chain B: D.20, D.63, E.64, N.65, T.91, K.92, S.93, K.113
- Ligands: MG.14
No protein-ligand interaction detected (PLIP)BEF.28: 9 residues within 4Å:- Chain B: D.244, N.245, A.276, T.277, R.281, H.421, H.505
- Ligands: ZN.16, GOL.21
No protein-ligand interaction detected (PLIP)- 3 x ZN: ZINC ION(Non-covalent)
ZN.3: 6 residues within 4Å:- Chain A: D.244, N.245, T.277, D.420, H.421
- Ligands: BEF.11
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.244, A:D.244, A:T.277, A:D.420, A:H.421
ZN.4: 6 residues within 4Å:- Chain A: N.245, D.366, H.370, H.421, H.505
- Ligands: BEF.11
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.366, A:D.366, A:H.370, A:H.505
ZN.16: 7 residues within 4Å:- Chain B: D.244, N.245, T.277, R.281, D.420, H.421
- Ligands: BEF.28
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.244, B:T.277, B:D.420, B:H.421
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: P.12, Y.13, K.35, G.36, Y.37, Q.129
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.13, A:K.35
- Water bridges: A:Y.37
GOL.6: 6 residues within 4Å:- Chain A: L.24, L.25, H.28, K.113, P.114, V.115
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.28, A:V.115
GOL.7: 6 residues within 4Å:- Chain A: T.14, Q.38, T.40, N.55, D.56, F.57
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.38, A:N.55, A:D.56
- Water bridges: A:T.14
GOL.17: 6 residues within 4Å:- Chain B: L.24, L.25, H.28, K.113, P.114, V.115
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.115
GOL.18: 6 residues within 4Å:- Chain B: L.450, D.451, Y.452, P.454, E.459, K.476
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:L.450, B:Y.452, B:Y.452, B:Y.452, B:K.476
GOL.19: 7 residues within 4Å:- Chain A: K.79, K.106, I.107, A.108
- Chain B: K.126, Q.130, I.134
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:K.126, A:A.108
- Water bridges: B:Q.130, A:K.79, A:K.79
GOL.20: 4 residues within 4Å:- Chain A: E.80
- Chain B: R.167, R.168, F.171
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.168, A:E.80, A:E.80
- Water bridges: B:E.164, B:F.171
GOL.21: 7 residues within 4Å:- Chain B: A.276, T.277, M.368, N.441, Y.444, H.505
- Ligands: BEF.28
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.441, B:H.505
- Water bridges: B:T.277, B:N.441
- 9 x FMT: FORMIC ACID(Non-functional Binders)
FMT.8: 6 residues within 4Å:- Chain A: L.128, Q.129, Q.130, H.131, S.132
- Chain B: E.260
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.131, A:H.131, A:S.132, A:S.132
- Water bridges: A:Q.130
FMT.9: 4 residues within 4Å:- Chain A: L.450, D.451, Y.452, P.454
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.451, A:Y.452
FMT.10: 5 residues within 4Å:- Chain A: R.216, P.217, T.218, D.222, Q.226
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.216
FMT.22: 5 residues within 4Å:- Chain B: L.128, Q.129, Q.130, H.131, S.132
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.131, B:S.132, B:S.132, B:S.132
- Water bridges: B:Q.130
FMT.23: 7 residues within 4Å:- Chain B: T.151, Q.152, S.154, G.155, K.156, L.157, E.161
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.154
FMT.24: 7 residues within 4Å:- Chain B: R.216, P.217, T.218, M.219, D.222, K.225, Q.226
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.216, B:K.225
FMT.25: 4 residues within 4Å:- Chain A: K.255, S.256
- Chain B: P.83, Y.84
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.252, A:S.256
FMT.26: 4 residues within 4Å:- Chain B: K.237, S.353, M.411, Y.413
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.237
FMT.27: 7 residues within 4Å:- Chain B: G.155, K.156, L.157, W.162, L.197, R.200, F.201
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.201
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmitz, C. et al., Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors. Nucleic Acids Res. (2022)
- Release Date
- 2022-12-14
- Peptides
- Response regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.91 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 4 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)(Non-covalent)
- 3 x ZN: ZINC ION(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 9 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schmitz, C. et al., Response regulator PorX coordinates oligonucleotide signalling and gene expression to control the secretion of virulence factors. Nucleic Acids Res. (2022)
- Release Date
- 2022-12-14
- Peptides
- Response regulator: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B