SMTL ID : 7shv.1

Crystal structure of BRAF kinase domain bound to GDC0879

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-dimer

Ligands

2 x 29L: 2-{4-[(1E)-1-(hydroxyimino)-2,3-dihydro-1H-inden-5-yl]-3-(pyridin-4-yl)-1H-pyrazol-1-yl}ethanol(Non-covalent)

29L.1: 15 residues within 4Å: Chain A: I.44, V.52, A.62, K.64, E.82, L.95, I.108, T.110, Q.111, W.112, C.113, N.161, F.164, D.175, F.176 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.52, A:K.64, A:L.95, A:I.108, A:T.110, A:W.112, A:F.164, A:F.164 Hydrogen bonds: A:K.64, A:E.82, A:E.82, A:C.113, A:D.175, A:F.176 29L.2: 16 residues within 4Å: Chain B: S.46, V.52, A.62, K.64, E.82, L.86, L.95, I.108, T.110, Q.111, W.112, C.113, N.161, F.164, D.175, F.176 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.52, B:A.62, B:K.64, B:K.64, B:I.108, B:T.110, B:W.112, B:F.164, B:F.164, B:D.175 Hydrogen bonds: B:S.46, B:K.64, B:E.82, B:C.113, B:D.175, B:D.175, B:F.176 pi-Stacking: B:F.164

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: W.31, R.87, R.90 Chain B: W.31, R.90 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: E.204, P.213, Y.214, S.215, S.218, R.282 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Clearing the Path to Rapid High-Quality Protein Purification. To Be Published

Release Date

2022-10-26

Peptides

Serine/threonine-protein kinase B-raf: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase B-raf