SMTL ID : 7tbe.2 (3 other biounits)

Crystal structure of Plasmepsin X from Plasmodium vivax in complex with WM4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.35 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.116 No protein-ligand interaction detected (PLIP)

1 x I0I: 3-[(R)-[(2E,4S)-2-imino-4-methyl-6-oxo-4-(propan-2-yl)-1,3-diazinan-1-yl](phenyl)methyl]-N-[(1S)-1-phenylethyl]benzamide(Non-covalent)

I0I.2: 15 residues within 4Å: Chain A: Q.29, I.46, D.48, G.50, F.93, I.139, F.141, I.144, Y.212, D.238, G.240, T.241, I.309, V.311, L.320 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.46, A:F.93, A:I.139, A:F.141, A:I.144, A:Y.212, A:I.309, A:I.309, A:V.311 Hydrogen bonds: A:G.240, A:G.240 Salt bridges: A:D.48, A:D.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hodder, A.N. et al., Basis for drug selectivity of plasmepsin IX and X inhibition in Plasmodium falciparum and vivax. Structure (2022)

Release Date

2022-05-04

Peptides

Plasmepsin X: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Plasmepsin X

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