SMTL ID : 8f7o.1

BRAF kinase in complex with TAK580 (tovorafenib)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.54 Å

Oligo State

homo-dimer

Ligands

2 x QOP: 6-amino-5-chloro-N-[(1R)-1-(5-{[5-chloro-4-(trifluoromethyl)pyridin-2-yl]carbamoyl}-1,3-thiazol-2-yl)ethyl]pyrimidine-4-carboxamide(Non-covalent)

QOP.1: 19 residues within 4Å: Chain A: V.31, A.41, V.42, K.43, E.61, L.65, I.73, L.74, I.87, T.89, Q.90, W.91, C.92, L.127, H.134, I.152, G.153, D.154, F.155 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.41, A:K.43, A:L.65 Hydrogen bonds: A:K.43, A:E.61, A:T.89, A:T.89, A:C.92, A:C.92, A:D.154 pi-Cation interactions: A:K.43 Halogen bonds: A:I.152 QOP.2: 22 residues within 4Å: Chain B: I.23, V.31, A.41, V.42, K.43, E.61, V.64, L.65, I.73, L.74, I.87, T.89, Q.90, W.91, C.92, L.127, H.134, F.143, I.152, G.153, D.154, F.155 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.31, B:A.41, B:K.43, B:L.65, B:D.154 Hydrogen bonds: B:E.61, B:E.61, B:T.89, B:T.89, B:C.92, B:C.92, B:D.154 pi-Cation interactions: B:K.43 Halogen bonds: B:I.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tkacik, E. et al., Structure and RAF family kinase isoform selectivity of type II RAF inhibitors tovorafenib and naporafenib. J.Biol.Chem. (2023)

Release Date

2023-04-12

Peptides

Serine/threonine-protein kinase B-raf: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase B-raf

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