This is the original implementation of lDDT, from 2013.
You should instead be using version 2.0, now incorporated into the Structure Assessment tool!
Workspace for : Example_2
Results
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Reference structure
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| Model name | Global lDDT | Local lDDT plot |
Local lDDT - 3D
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|---|---|---|---|
| T0542TS236_1_clean.pdb_preprocessed | 0.6067 |
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Log - Click to open the log.
INFO - Calculation started
INFO - Checking input files
INFO - Checking model file
INFO - Checking if file is a valid compressed archive
INFO - T0542TS236_1_clean.pdb does not appear to be a valid compressed archive
INFO - Checking if file is a valid PDB file
INFO - Checking reference file
INFO - Checking if file is a valid compressed archive
INFO - T0542.pdb does not appear to be a valid compressed archive
INFO - Checking if file is a valid PDB file
INFO - Input correctly processed
INFO - Structure pre-processing started
INFO - Your input consists in 1 MODELS.
INFO - Pre-processing model T0542TS236_1_clean.pdb
INFO - Your input consists in 1 REFERENCES.
INFO - Pre-processing Reference T0542.pdb
INFO - Structure pre-processing done
INFO - Running lDDT and generating plots
INFO - Running lDDT for T0542TS236_1_clean.pdb_preprocessed
INFO - lDDT for T0542TS236_1_clean.pdb_preprocessed correctly calculated!
INFO - Finished
If you use local distance difference test (lDDT), please cite the following reference:
Mariani V, Biasini M, Barbato A, Schwede T
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.
Bioinformatics 29, 2722-2728. (2013) 
23986568
10.1093/bioinformatics/btt473
2398656810.1093/bioinformatics/btt473