Q04660 | SWISS-MODEL Repository

Q04660 (ERB1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ribosome biogenesis protein ERB1 UniProtKB InterPro STRING Interactive Modelling

It is possible new templates exist for this target since these models were created.

Available Structures

25 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model	7r7a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	122-807	99.85	2×ZN;
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State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model	7nac PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	122-807	99.85	2×ZN; 1×SAH;
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60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)	8v87 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q07896; Q07915; Q08235; Q08962; Q12024; Q12389; Q12522; Q12690;	122-807	100.0	1×ADP; 2×MG; 1×GDP; 1×K; 2×ZN;
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State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P25582; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	125-807	100.0
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State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6elz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	125-807	100.0	1×ZN;
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Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae	7ohr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	125-807	100.0	1×ZN;
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7ohv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q07915; Q08235; Q12024; Q12522; Q12690;	130-807	100.0	1×ZN;
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Yeast nucleolar pre-60S ribosomal subunit (state 3)	6cb1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05740; P05743; P05744; P05745; P05748; P0C2H6; P0CX23; P0CX49; P0CX84; P10664; P10962; P14120; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q03532; Q08235; Q12690;	239-807	85.74	2×ZN;
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State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model	7nad PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX41; P0CX82; P14120; P14126; P17076; P25582; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q04031; Q07896; Q07915; Q12024;	392-807	99.36	1×ZN;
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State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model	7r72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX82; P14120; P14126; P17076; P25582; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q07896; Q07915; Q12024;	392-807	99.36	1×ZN;
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60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)	8v84 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX43; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36080; P36105; P38061; P38779; P38789; P38805; P40007; P40078; P40693; P40991; P43586; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q06511; Q07915; Q08235; Q08962; Q12389; Q12522; Q12690;	125-399	100.0	1×GDP; 1×MG; 2×ZN;
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60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)	8v83 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX43; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36080; P36105; P38061; P38779; P38789; P38805; P40007; P40078; P40693; P40991; P43586; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q06511; Q07915; Q08235; Q08962; Q12522; Q12690;	125-399	100.0	2×ZN;
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State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model	7r6q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05745; P05748; P0C2H6; P0CX84; P17076; P25582; P38779; P40007; P40693; P53261; P53927; P87262; Q03532; Q12690;	236-415	100
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Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae	7ohs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q07915; Q08235; Q12522; Q12690;	239-399	100	2×ZN;
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…	7ohw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q08235; Q12522; Q12690;	239-399	100.0	1×ZN;
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…	7ohp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P14126; P17076; P26784; P33201; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P53261; P53927; Q02326; Q02892; Q03532; Q12522; Q12690;	239-399	100.0	1×ZN;
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State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6em1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P05737; P05738; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q07915; Q08235; Q12522; Q12690;	239-399	100	2×ZN;
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Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate	8e5t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05744; P05745; P05748; P0CX23; P0CX49; P10664; P10962; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P39744; P40693; P53261; P53927; Q02326; Q03532; Q08235; Q12176; Q12690;	239-395	100.0	33×MG; 1×ZN;
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Yeast nucleolar pre-60S ribosomal subunit (state 2)	6c0f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36080; P36105; P38061; P38779; P38789; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q06511; Q07915; Q08235; Q12522; Q12690;	239-395	53.5	3×ZN;
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State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q08235; Q12690;	244-397	100.0
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State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q03532; Q07915; Q08235; Q12522; Q12690;	244-397	100.0
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut dow…	7ohx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P40693; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q07915; Q12522; Q12690;	239-376	100.0	2×ZN;
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State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region	7r6k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05745; P05748; P17076; P25582; P36049; P39744; P40078; P40991; P43586; P87262; Q04031; Q07896; Q08235; Q08962;	139-244	100
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State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model	7r7c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0CX43; P25582; P36049; P40078; P40991; P43586; Q02892; Q08235; Q08962;	153-215	100
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The carboxy-terminal domain of Erb1 is a seven-bladed beta-propeller that binds RNA.	4u7a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	416-807	100.0	2×EDO; 1×GOL; 1×EOH;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	8v87.1.h	monomer	0.71	122-807		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Q04660 (ERB1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ribosome biogenesis protein ERB1 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

25 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

Ribosome biogenesis protein ERB1 UniProtKB InterPro STRING Interactive Modelling