SMTL ID : 3u32.1

ATP synthase c10 ring reacted with DCCD at pH 5.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-10-mer

Ligands

10 x DCW: DICYCLOHEXYLUREA(Covalent)

DCW.1: 6 residues within 4Å: Chain A: L.19, E.59, L.63, L.66 Chain J: A.60, F.64 3 PLIP interactions: 1 interactions with chain J, 2 interactions with chain A Hydrophobic interactions: J:F.64, A:L.19, A:L.66 DCW.2: 7 residues within 4Å: Chain A: A.60, F.64 Chain B: L.19, E.59, G.62, L.63, L.66 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.19, B:L.66, A:F.64, A:F.64 DCW.3: 7 residues within 4Å: Chain B: A.60, F.64 Chain C: L.19, E.59, G.62, L.63, L.66 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:L.19, C:L.66, B:F.64, B:F.64 DCW.4: 7 residues within 4Å: Chain C: A.60, F.64 Chain D: L.19, F.55, E.59, L.63, L.66 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:L.19, D:F.55, D:L.66, C:F.64 Hydrogen bonds: D:E.59 DCW.5: 8 residues within 4Å: Chain D: L.57, A.60, F.64 Chain E: L.19, F.55, E.59, L.63, L.66 7 PLIP interactions: 4 interactions with chain E, 3 interactions with chain D Hydrophobic interactions: E:L.19, E:F.55, E:L.66, D:L.57, D:F.64, D:F.64 Hydrogen bonds: E:E.59 DCW.6: 6 residues within 4Å: Chain E: A.60, F.64 Chain F: L.19, E.59, L.63, L.66 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:L.19, F:L.66, E:F.64 DCW.7: 7 residues within 4Å: Chain F: A.60, F.64 Chain G: L.19, E.59, G.62, L.63, L.66 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain G Hydrophobic interactions: F:F.64, F:F.64, G:L.19, G:L.66 DCW.8: 7 residues within 4Å: Chain G: A.60, F.64 Chain H: L.19, E.59, G.62, L.63, L.66 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain H Hydrophobic interactions: G:F.64, G:F.64, H:L.19, H:L.66 DCW.9: 7 residues within 4Å: Chain H: A.60, F.64 Chain I: L.19, F.55, E.59, L.63, L.66 5 PLIP interactions: 4 interactions with chain I, 1 interactions with chain H Hydrophobic interactions: I:L.19, I:F.55, I:L.66, H:F.64 Hydrogen bonds: I:E.59 DCW.10: 8 residues within 4Å: Chain I: L.57, A.60, F.64 Chain J: L.19, F.55, E.59, L.63, L.66 7 PLIP interactions: 3 interactions with chain I, 4 interactions with chain J Hydrophobic interactions: I:L.57, I:F.64, I:F.64, J:L.19, J:F.55, J:L.66 Hydrogen bonds: J:E.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Symersky, J. et al., Structure of the c(10) ring of the yeast mitochondrial ATP synthase in the open conformation. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-02-08

Peptides

ATP synthase subunit C, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
K

G
L

H
M

I
N

J
O

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit C, mitochondrial

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