SMTL ID : 5vkq.1

Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

32 x PCF: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE(Non-covalent)(Non-functional Binders)

PCF.1: 7 residues within 4Å: Chain A: I.1271, I.1416, L.1420, F.1422, H.1423 Chain B: F.1452 Ligands: PCF.2 Ligand excluded by PLIP PCF.2: 4 residues within 4Å: Chain A: S.1268, L.1272 Ligands: PCF.1, PCF.13 Ligand excluded by PLIP PCF.3: 12 residues within 4Å: Chain A: Y.1528, Y.1532, K.1535, I.1536, I.1540, L.1543 Chain D: H.1492, I.1494, N.1495, E.1498 Ligands: PCF.29, PCF.30 Ligand excluded by PLIP PCF.4: 6 residues within 4Å: Chain A: W.1394, T.1396 Chain B: N.1467, W.1529, L.1533 Ligands: PCF.6 Ligand excluded by PLIP PCF.5: 7 residues within 4Å: Chain A: F.1486, V.1489, H.1492, P.1493, I.1494 Chain D: S.1319, T.1324 Ligand excluded by PLIP PCF.6: 1 residues within 4Å: Ligands: PCF.4 Ligand excluded by PLIP PCF.7: 12 residues within 4Å: Chain A: G.1363, L.1364, L.1410, A.1430, I.1431, I.1433, G.1434, D.1435, L.1437 Chain B: I.1540 Ligands: PCF.8, PCF.16 Ligand excluded by PLIP PCF.8: 8 residues within 4Å: Chain A: L.1437, K.1438, A.1441, L.1444 Chain D: L.1425 Ligands: PCF.7, PCF.16, PCF.32 Ligand excluded by PLIP PCF.9: 6 residues within 4Å: Chain B: W.1394, T.1396 Chain C: N.1467, W.1529, L.1533 Ligands: PCF.11 Ligand excluded by PLIP PCF.10: 7 residues within 4Å: Chain A: S.1319, T.1324 Chain B: F.1486, V.1489, H.1492, P.1493, I.1494 Ligand excluded by PLIP PCF.11: 1 residues within 4Å: Ligands: PCF.9 Ligand excluded by PLIP PCF.12: 12 residues within 4Å: Chain B: G.1363, L.1364, L.1410, V.1414, A.1430, I.1431, I.1433, G.1434, L.1437 Chain C: I.1540 Ligands: PCF.13, PCF.17 Ligand excluded by PLIP PCF.13: 8 residues within 4Å: Chain A: L.1425 Chain B: L.1437, K.1438, A.1441, L.1444 Ligands: PCF.2, PCF.12, PCF.17 Ligand excluded by PLIP PCF.14: 7 residues within 4Å: Chain B: I.1271, I.1416, L.1420, F.1422, H.1423 Chain C: F.1452 Ligands: PCF.15 Ligand excluded by PLIP PCF.15: 4 residues within 4Å: Chain B: S.1268, L.1272 Ligands: PCF.14, PCF.22 Ligand excluded by PLIP PCF.16: 12 residues within 4Å: Chain A: H.1492, I.1494, N.1495, E.1498 Chain B: Y.1528, Y.1532, K.1535, I.1536, I.1540, L.1543 Ligands: PCF.7, PCF.8 Ligand excluded by PLIP PCF.17: 11 residues within 4Å: Chain B: H.1492, I.1494, E.1498 Chain C: Y.1528, Y.1532, K.1535, I.1536, I.1540, L.1543 Ligands: PCF.12, PCF.13 Ligand excluded by PLIP PCF.18: 6 residues within 4Å: Chain C: W.1394, T.1396 Chain D: N.1467, W.1529, L.1533 Ligands: PCF.20 Ligand excluded by PLIP PCF.19: 8 residues within 4Å: Chain B: S.1319, T.1324 Chain C: F.1452, F.1486, V.1489, H.1492, P.1493, I.1494 Ligand excluded by PLIP PCF.20: 2 residues within 4Å: Chain C: W.1394 Ligands: PCF.18 Ligand excluded by PLIP PCF.21: 14 residues within 4Å: Chain C: G.1363, L.1364, L.1410, V.1414, A.1430, I.1431, I.1433, G.1434, D.1435, L.1437 Chain D: F.1454, I.1540 Ligands: PCF.22, PCF.25 Ligand excluded by PLIP PCF.22: 8 residues within 4Å: Chain B: L.1425 Chain C: L.1437, K.1438, A.1441, L.1444 Ligands: PCF.15, PCF.21, PCF.25 Ligand excluded by PLIP PCF.23: 7 residues within 4Å: Chain C: I.1271, I.1416, L.1420, F.1422, H.1423 Chain D: F.1452 Ligands: PCF.24 Ligand excluded by PLIP PCF.24: 4 residues within 4Å: Chain C: S.1268, L.1272 Ligands: PCF.23, PCF.30 Ligand excluded by PLIP PCF.25: 12 residues within 4Å: Chain C: H.1492, I.1494, N.1495, E.1498 Chain D: Y.1528, Y.1532, K.1535, I.1536, I.1540, L.1543 Ligands: PCF.21, PCF.22 Ligand excluded by PLIP PCF.26: 5 residues within 4Å: Chain A: N.1467, L.1533 Chain D: W.1394, T.1396 Ligands: PCF.28 Ligand excluded by PLIP PCF.27: 7 residues within 4Å: Chain C: S.1319, T.1324 Chain D: F.1486, V.1489, H.1492, P.1493, I.1494 Ligand excluded by PLIP PCF.28: 1 residues within 4Å: Ligands: PCF.26 Ligand excluded by PLIP PCF.29: 12 residues within 4Å: Chain A: I.1540 Chain D: G.1363, L.1364, L.1410, A.1430, I.1431, I.1433, G.1434, D.1435, L.1437 Ligands: PCF.3, PCF.30 Ligand excluded by PLIP PCF.30: 8 residues within 4Å: Chain C: L.1425 Chain D: L.1437, K.1438, A.1441, L.1444 Ligands: PCF.3, PCF.24, PCF.29 Ligand excluded by PLIP PCF.31: 7 residues within 4Å: Chain A: F.1452 Chain D: I.1271, I.1416, L.1420, F.1422, H.1423 Ligands: PCF.32 Ligand excluded by PLIP PCF.32: 4 residues within 4Å: Chain D: S.1268, L.1272 Ligands: PCF.8, PCF.31 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, P. et al., Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature (2017)

Release Date

2017-06-28

Peptides

No mechanoreceptor potential C isoform L: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

No mechanoreceptor potential C isoform L