SMTL ID : 6e22.2 (1 other biounit)

Displacement of WDR5 from chromatin by a pharmacological WIN site inhibitor with picomolar affinity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x HLS: 3-{[(4,5-dihydro-1H-imidazol-2-yl)amino]methyl}-N-[(3,5-dimethoxyphenyl)methyl]-4-fluorobenzamide(Non-covalent)

HLS.1: 14 residues within 4Å: Chain A: S.28, S.70, D.71, F.112, C.113, F.128, P.152, S.154, Y.170, K.238, Y.239, C.240, F.242, I.284 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.128, A:F.128 Hydrogen bonds: A:S.70, A:C.240, A:C.240 pi-Stacking: A:F.112, A:Y.170

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.160, N.204, K.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.204 Water bridges: A:R.160 Salt bridges: A:R.160, A:K.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aho, E.R. et al., Displacement of WDR5 from Chromatin by a WIN Site Inhibitor with Picomolar Affinity. Cell Rep (2019)

Release Date

2019-03-13

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

WD repeat-containing protein 5

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