SMTL ID : 6ilk.2 (3 other biounits)

Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 7.4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 15 residues within 4Å: Chain A: I.85, T.87, F.105, V.107, I.134, Y.136, P.158, V.160, M.171, I.173, Y.182, S.183, N.184, L.209, F.230 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.85, A:T.87, A:V.107, A:Y.136, A:V.160, A:I.173, A:Y.182, A:L.209 Hydrogen bonds: A:R.88, A:N.184 SPH.2: 15 residues within 4Å: Chain F: I.85, T.87, F.105, V.107, I.134, Y.136, P.158, V.160, M.171, I.173, Y.182, S.183, N.184, L.209, F.230 10 PLIP interactions: 10 interactions with chain F Hydrophobic interactions: F:I.85, F:T.87, F:V.107, F:Y.136, F:V.160, F:I.173, F:Y.182, F:L.209 Hydrogen bonds: F:R.88, F:N.184 SPH.3: 15 residues within 4Å: Chain K: I.85, T.87, F.105, V.107, I.134, Y.136, P.158, V.160, M.171, I.173, Y.182, S.183, N.184, L.209, F.230 10 PLIP interactions: 10 interactions with chain K Hydrophobic interactions: K:I.85, K:T.87, K:V.107, K:Y.136, K:V.160, K:I.173, K:Y.182, K:L.209 Hydrogen bonds: K:R.88, K:N.184 SPH.4: 15 residues within 4Å: Chain P: I.85, T.87, F.105, V.107, I.134, Y.136, P.158, V.160, M.171, I.173, Y.182, S.183, N.184, L.209, F.230 10 PLIP interactions: 10 interactions with chain P Hydrophobic interactions: P:I.85, P:T.87, P:V.107, P:Y.136, P:V.160, P:I.173, P:Y.182, P:L.209 Hydrogen bonds: P:R.88, P:N.184 SPH.5: 15 residues within 4Å: Chain U: I.85, T.87, F.105, V.107, I.134, Y.136, P.158, V.160, M.171, I.173, Y.182, S.183, N.184, L.209, F.230 10 PLIP interactions: 10 interactions with chain U Hydrophobic interactions: U:I.85, U:T.87, U:V.107, U:Y.136, U:V.160, U:I.173, U:Y.182, U:L.209 Hydrogen bonds: U:R.88, U:N.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, X. et al., Human Neonatal Fc Receptor Is the Cellular Uncoating Receptor for Enterovirus B. Cell (2019)

Release Date

2019-05-15

Peptides

Capsid protein VP1: AFKPU
Capsid protein VP2: BGLQV
Capsid protein VP3: CHMRW
Capsid protein VP4: DINSX
Complement decay-accelerating factor: EJOTY

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
A

K
A

P
A

U
A

B
B

G
B

L
B

Q
B

V
B

C
C

H
C

M
C

R
C

W
C

D
D

I
D

N
D

S
D

X
D

E
E

J
E

O
E

T
E

Y
E

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

Complement decay-accelerating factor

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