SMTL ID : 7qoh.1

Unique vertex of the phicrAss001 virion with C5 symmetry imposed

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-5-2-3-2-mer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.296, A.299, P.491, T.494 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.296, A:A.299, A:P.491, A:T.494 MG.2: 5 residues within 4Å: Chain B: T.296, A.299, N.300, P.491, T.494 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:T.296, B:A.299, B:P.491, B:T.494, B:T.494 MG.3: 5 residues within 4Å: Chain C: T.296, A.299, N.300, P.491, T.494 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:T.296, C:P.491, C:T.494 MG.4: 4 residues within 4Å: Chain D: T.296, A.299, P.491, T.494 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:T.296, D:A.299, D:P.491, D:T.494 MG.5: 5 residues within 4Å: Chain E: T.296, A.299, N.300, P.491, T.494 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:T.296, E:A.299, E:P.491, E:T.494, E:T.494 MG.6: 4 residues within 4Å: Chain F: T.296, A.299, P.491, T.494 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:T.296, F:A.299, F:P.491, F:T.494, F:T.494

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bayfield, O.W. et al., Structural atlas of a human gut crassvirus. Nature (2023)

Release Date

2023-03-29

Peptides

Major capsid protein gp32: ABCDEF
Auxiliary capsid protein gp36: GHIJK
Portal vertex capsid protein gp57: LM
Head fiber trimer protein gp21: NOP
Portal protein gp20: QR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
a

H
b

I
d

J
e

K
f

L
g

M
h

N
i

O
j

P
k

Q
l

R
m

Major capsid protein gp32

Auxiliary capsid protein gp36

Portal vertex capsid protein gp57

Head fiber trimer protein gp21

Portal protein gp20

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