SMTL ID : 8dfv.1

Structural Basis of MicroRNA Biogenesis by Dicer-1 and Its Partner Protein Loqs-PB - complex IIa

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

10 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 4 residues within 4Å: Chain A: E.2032, D.2136, E.2139 Chain B: G.23 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.2032, A:E.2139 CA.2: 5 residues within 4Å: Chain A: E.1745, K.1901, D.1905, E.1908 Chain B: C.39 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.1745, A:D.1905 CA.3: 6 residues within 4Å: Chain A: D.1749, L.1752, V.1780, L.1785, E.1908 Chain B: A.38 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.1749, A:E.1908 CA.4: 3 residues within 4Å: Chain A: D.876, D.1669, H.1671 No protein-ligand interaction detected (PLIP) CA.5: 2 residues within 4Å: Chain B: A.36, A.38 No protein-ligand interaction detected (PLIP) CA.6: 3 residues within 4Å: Chain B: C.35, A.36, U.37 No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain B: C.35, U.37 No protein-ligand interaction detected (PLIP) CA.8: 4 residues within 4Å: Chain A: R.1027, S.1198, F.1203 Chain B: U.1 No protein-ligand interaction detected (PLIP) CA.9: 3 residues within 4Å: Chain A: A.1199 Chain B: G.2, A.3 No protein-ligand interaction detected (PLIP) CA.10: 2 residues within 4Å: Chain B: A.3, G.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jouravleva, K. et al., Structural basis of microRNA biogenesis by Dicer-1 and its partner protein Loqs-PB. Mol.Cell (2022)

Release Date

2022-11-16

Peptides

Endoribonuclease Dcr-1: A
Loquacious, isoform B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
K

Endoribonuclease Dcr-1

Loquacious, isoform B

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