SMTL ID : 8euv.1

Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01-COMBO1 FAB

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-mer
Ligands
24 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Banach, B.B. et al., Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site. Nat Commun (2023)
Release Date
2023-09-27
Peptides
Envelope glycoprotein gp120: ACE
Envelope glycoprotein gp41: BDF
VRC34.01-COMBO1 FAB variable heavy chain: GIK
VRC34.01-COMBO1 FAB variable light chain: HJL
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
E
E
B
B
D
D
F
F
G
G
I
I
K
K
H
H
J
J
L
L

Envelope glycoprotein gp120

Toggle Identical (ACE)

Envelope glycoprotein gp41

Toggle Identical (BDF)

VRC34.01-COMBO1 FAB variable heavy chain

Toggle Identical (GIK)

VRC34.01-COMBO1 FAB variable light chain

Toggle Identical (HJL)

Related Entries With Identical Sequence

4tvp.1 | 4zmj.1 | 5aco.1 | 5c7k.1 | 5cez.2 | 5cjx.1 | 5fyl.1 | 5i8c.1 | 5i8h.1 | 5i8h.2 | 5t3x.1 | 5t3z.1 | 5thr.1 | 5u7m.1 | 5u7o.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5v8l.1 | 5v8m.1 | 5viy.1 | 5vj6.1 | 5w6d.1 | 6cm3.1 | 6crq.1 | 6de7.1 | 6did.1 | 6me1.1 | 6me1.2 | 6mn7.1  more...