SMTL ID : 9e51.1

Cryo-EM structure of human LPHN2 (ADGRL2)/G13 complex in lipid nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 8 residues within 4Å: Chain D: T.140, V.144, I.148, D.149, N.165, Y.166, S.170, P.174 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:V.144, D:I.148, D:I.148, D:P.174 Hydrogen bonds: D:N.165 CLR.2: 10 residues within 4Å: Chain D: I.85, P.88, I.89, G.92, L.93, F.96, V.142, A.146, Y.150, Y.153 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.93, D:F.96, D:A.146, D:Y.150, D:Y.153, D:Y.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, F. et al., Cryo-EM structure of G13-bound human LPHN2 (ADGRL2) in lipid nanodiscs. To Be Published

Release Date

2025-11-12

Peptides

Isoform 2 of Guanine nucleotide-binding protein subunit alpha-13: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Adhesion G protein-coupled receptor L2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
A

Membrane

We predict this structure to be a membrane protein.
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Isoform 2 of Guanine nucleotide-binding protein subunit alpha-13

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Adhesion G protein-coupled receptor L2

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