SMTL ID : 9htr.1

Structure of CypD in complex with an inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x 01: 1-[(1~{S})-2-[2-(2-bromophenyl)pyrazolidin-1-yl]-2-oxidanylidene-1-phenyl-ethyl]-3-[[(1~{R},9~{R},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]methyl]urea

01.1: 19 residues within 4Å: Chain A: R.55, I.57, F.60, M.61, Q.63, G.72, T.73, G.74, G.75, S.81, R.82, A.101, N.102, T.107, G.109, Q.111, F.113, L.122, H.126 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.113, A:L.122 Hydrogen bonds: A:R.55, A:Q.63, A:R.82, A:R.82, A:N.102, A:N.102, A:N.102, A:T.107 Water bridges: A:R.55, A:R.55, A:R.55, A:Q.111, A:Q.111 pi-Stacking: A:F.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zacharchenko, T., Structure of CypD in complex with an inhibitor. To Be Published

Release Date

2025-11-05

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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