SMTL ID : 7dg9.1

DPBB domain of VCP-like ATPase from Aeropyrum pernix

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 2 residues within 4Å: Chain A: E.9 Ligands: ZN.2 No protein-ligand interaction detected (PLIP) ZN.2: 2 residues within 4Å: Chain A: E.9 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.9, A:E.9 ZN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.4: 2 residues within 4Å: Chain A: D.85 Ligands: ZN.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.85, H2O.2, H2O.4, H2O.5 ZN.5: 2 residues within 4Å: Chain A: D.85 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.85, A:D.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yagi, S. et al., Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. (2021)

Release Date

2021-09-29

Peptides

Cell division control protein 48, AAA family: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division control protein 48, AAA family