SMTL ID : 7di0.2 (2 other biounits)

Crystal structure of the rationally designed apDPBB_sym_79 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: M.27, D.28, K.29, R.32, P.58, A.59, V.64 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.29, A:A.59 Salt bridges: A:R.32 SO4.2: 4 residues within 4Å: Chain A: K.29, R.32, S.38, V.39 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.38, A:V.39 Salt bridges: A:K.29, A:R.32 SO4.3: 3 residues within 4Å: Chain A: R.22, R.26, R.60 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.22, A:R.26, A:R.26, A:R.60 Salt bridges: A:R.22, A:R.26, A:R.60 SO4.4: 5 residues within 4Å: Chain A: K.73, R.76, V.81, S.82, V.83 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.83 Water bridges: A:K.73, A:K.73 Salt bridges: A:K.73, A:R.76 SO4.5: 3 residues within 4Å: Chain A: L.13, R.66, R.70 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.66, A:R.70 SO4.6: 1 residues within 4Å: Chain A: R.66 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yagi, S. et al., Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc. (2021)

Release Date

2021-09-29

Peptides

apDPBB_sym_79 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

apDPBB_sym_79 protein

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