Appendix C: Model quality assessment tools

Please find here a (non exhaustive) list of tools and services:

• QMEAN: The default model quality estimation pipelines in SWISS-MODEL.
• ModEval: Model quality estimation server based on statistical potentials of mean force.
• ModFOLD: Model quality estimation server related to the IntFOLD protein structure and function prediction server.
• MolProbity: Structure validation web server - Primarily developed to evaluate stereochemistry in experimentally determined structures.
• ProQ3: Model quality composit score that combines various features using deep learning.
• SAVES: The Structure Analysis and Verification Server, runs up to six different programs for structure validation.